Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e11
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...   107   9e-24
05_01_0226 + 1682671-1682717,1682979-1683119,1683218-1683343,168...    29   3.8  

>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score =  107 bits (257), Expect = 9e-24
 Identities = 49/133 (36%), Positives = 81/133 (60%)
 Frame = -3

Query: 598 ILIMDQADVFLMQNWXXXXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFAS 419
           I+++D ADV LMQ+W             P K H T+  R+R W ++  A+YYRQT++ +S
Sbjct: 536 IVVVDHADVILMQSWSHLYAVFEQLNQLPSKEHGTNVMRIRPWYLDQHARYYRQTILLSS 595

Query: 418 VLLPEIKSVLNKKCHNYAGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFE 239
            L PE+ ++ N  C NY GKV +    + G + ++  + PQ++ RF+AS+  E  +ARF+
Sbjct: 596 YLTPEMNALFNGLCLNYEGKVKLVTEFK-GVLSKIQFEAPQVYERFDASSITEVDDARFD 654

Query: 238 YFIKEVLPKQRDT 200
           +F K+V PK +++
Sbjct: 655 HFCKKVYPKIQES 667



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = -3

Query: 727 KSLKLYTDFYSSDIIVASPLGL 662
           KS+ L+++FYSSDIIVASPL L
Sbjct: 387 KSMNLFSNFYSSDIIVASPLAL 408


>05_01_0226 +
           1682671-1682717,1682979-1683119,1683218-1683343,
           1683545-1683908
          Length = 225

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 77  IVPYLRVFADLHKTNVFFLKIIPYAHVIEVA 169
           IVP L     LH+  +FFL ++PYA V+ VA
Sbjct: 18  IVPLL---LSLHQLYLFFLHLLPYACVVSVA 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,131,162
Number of Sequences: 37544
Number of extensions: 325444
Number of successful extensions: 706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)