Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e11
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022964-1|AAH22964.1|  756|Homo sapiens chromosome 1 open readi...   262   1e-69
AL022398-9|CAA18546.1|  756|Homo sapiens chromosome 1 open readi...   262   1e-69
AL022398-10|CAI95693.1|  247|Homo sapiens chromosome 1 open read...   153   6e-37
BC011001-1|AAH11001.2|  313|Homo sapiens GLB1L3 protein protein.       30   9.8  

>BC022964-1|AAH22964.1|  756|Homo sapiens chromosome 1 open reading
            frame 107 protein.
          Length = 756

 Score =  262 bits (641), Expect = 1e-69
 Identities = 114/213 (53%), Positives = 155/213 (72%)
 Frame = -3

Query: 727  KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
            +S++LY  FYSSDI++ASPLGLR ++G EGE+ RD+DFL+SIE+LI+DQAD++LMQNW  
Sbjct: 434  RSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEH 493

Query: 547  XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                     L P  +H  DFSRVR W++N W+KYYRQTL+F ++   +I SV NK C N 
Sbjct: 494  VLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNM 553

Query: 367  AGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSH 188
             G+V V N    GSI  VL+Q+P +F R  A       +ARF +F+ ++LP+ RD +MSH
Sbjct: 554  QGQVAVRNVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVMSH 613

Query: 187  TLIYVPSYFDYVRIRNYFKKEDISFVQICEYSK 89
            TLIY+PSYFD+VR+RNYFKKE+++F  ICEY++
Sbjct: 614  TLIYIPSYFDFVRLRNYFKKEELNFTHICEYTQ 646


>AL022398-9|CAA18546.1|  756|Homo sapiens chromosome 1 open reading
            frame 107 protein.
          Length = 756

 Score =  262 bits (641), Expect = 1e-69
 Identities = 114/213 (53%), Positives = 155/213 (72%)
 Frame = -3

Query: 727  KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
            +S++LY  FYSSDI++ASPLGLR ++G EGE+ RD+DFL+SIE+LI+DQAD++LMQNW  
Sbjct: 434  RSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEH 493

Query: 547  XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                     L P  +H  DFSRVR W++N W+KYYRQTL+F ++   +I SV NK C N 
Sbjct: 494  VLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNM 553

Query: 367  AGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSH 188
             G+V V N    GSI  VL+Q+P +F R  A       +ARF +F+ ++LP+ RD +MSH
Sbjct: 554  QGQVAVRNVPMTGSISHVLVQLPHVFQRMEAENLASVIDARFNFFVNKILPQYRDAVMSH 613

Query: 187  TLIYVPSYFDYVRIRNYFKKEDISFVQICEYSK 89
            TLIY+PSYFD+VR+RNYFKKE+++F  ICEY++
Sbjct: 614  TLIYIPSYFDFVRLRNYFKKEELNFTHICEYTQ 646


>AL022398-10|CAI95693.1|  247|Homo sapiens chromosome 1 open reading
           frame 107 protein.
          Length = 247

 Score =  153 bits (371), Expect = 6e-37
 Identities = 68/124 (54%), Positives = 91/124 (73%)
 Frame = -3

Query: 727 KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
           +S++LY  FYSSDI++ASPLGLR ++G EGE+ RD+DFL+SIE+LI+DQAD++LMQNW  
Sbjct: 114 RSIRLYAPFYSSDILIASPLGLRTIIGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEH 173

Query: 547 XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                    L P  +H  DFSRVR W++N W+KYYRQTL+F ++   +I SV NK C N 
Sbjct: 174 VLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNM 233

Query: 367 AGKV 356
            G+V
Sbjct: 234 QGQV 237


>BC011001-1|AAH11001.2|  313|Homo sapiens GLB1L3 protein protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 340 VEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQ 209
           +++G +   LLQ P++  R    + +E+ E  F++ I  V+P Q
Sbjct: 169 MDLGGLPSWLLQDPRLLLRTTNKSFIEAVEKYFDHLIPRVIPLQ 212


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,961,987
Number of Sequences: 237096
Number of extensions: 1790347
Number of successful extensions: 3142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3142
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)