Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e11
         (729 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051862-1|AAK93286.1|  449|Drosophila melanogaster LD35854p pro...   219   2e-57
AE013599-3739|AAF47105.1|  700|Drosophila melanogaster CG3735-PA...   219   2e-57
AE014296-3455|ABC66163.1|  395|Drosophila melanogaster CG34000-P...    29   6.5  

>AY051862-1|AAK93286.1|  449|Drosophila melanogaster LD35854p
           protein.
          Length = 449

 Score =  219 bits (536), Expect = 2e-57
 Identities = 106/213 (49%), Positives = 148/213 (69%)
 Frame = -3

Query: 727 KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
           K++ L++D  +SD+++ASPLGLRMLV    +++ D+DFL SIE+LI+DQA++FL QNW  
Sbjct: 127 KTMSLFSDMNASDMLIASPLGLRMLVT---DKESDFDFLNSIELLIIDQAELFLAQNWEN 183

Query: 547 XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                    LQP+K  DT+  RVR+W ++G + +YRQTL F+S  LPE ++V N KC+NY
Sbjct: 184 LLHSLDHLHLQPQKLPDTNCQRVRTWCLSGASSFYRQTLFFSSHELPEFRAVFNSKCNNY 243

Query: 367 AGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSH 188
            GKV   N VE G I+ VL  I Q+F   N S+   + + RF+YF+K ++P+      SH
Sbjct: 244 QGKVRDSNLVEHGDIRNVLTPIHQVFRLINCSSVETTFDDRFQYFVKNIMPQFSKPGFSH 303

Query: 187 TLIYVPSYFDYVRIRNYFKKEDISFVQICEYSK 89
            ++YVPSYFDYVRIRN+FK E +SFVQI EY+K
Sbjct: 304 CMLYVPSYFDYVRIRNHFKTEMVSFVQINEYTK 336


>AE013599-3739|AAF47105.1|  700|Drosophila melanogaster CG3735-PA
            protein.
          Length = 700

 Score =  219 bits (536), Expect = 2e-57
 Identities = 106/213 (49%), Positives = 148/213 (69%)
 Frame = -3

Query: 727  KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
            K++ L++D  +SD+++ASPLGLRMLV    +++ D+DFL SIE+LI+DQA++FL QNW  
Sbjct: 378  KTMSLFSDMNASDMLIASPLGLRMLVT---DKESDFDFLNSIELLIIDQAELFLAQNWEN 434

Query: 547  XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                     LQP+K  DT+  RVR+W ++G + +YRQTL F+S  LPE ++V N KC+NY
Sbjct: 435  LLHSLDHLHLQPQKLPDTNCQRVRTWCLSGASSFYRQTLFFSSHELPEFRAVFNSKCNNY 494

Query: 367  AGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSH 188
             GKV   N VE G I+ VL  I Q+F   N S+   + + RF+YF+K ++P+      SH
Sbjct: 495  QGKVRDSNLVEHGDIRNVLTPIHQVFRLINCSSVETTFDDRFQYFVKNIMPQFSKPGFSH 554

Query: 187  TLIYVPSYFDYVRIRNYFKKEDISFVQICEYSK 89
             ++YVPSYFDYVRIRN+FK E +SFVQI EY+K
Sbjct: 555  CMLYVPSYFDYVRIRNHFKTEMVSFVQINEYTK 587


>AE014296-3455|ABC66163.1|  395|Drosophila melanogaster CG34000-PA
           protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 280 NASTALESAEARFEYFIKEVLP 215
           NAST+  SAE RFE F  E+LP
Sbjct: 339 NASTSSASAEMRFESFEAELLP 360


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,243,051
Number of Sequences: 53049
Number of extensions: 575051
Number of successful extensions: 1297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)