Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e11
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...   143   1e-34
Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    28   5.9  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AC006633-5|AAO21429.1|  506|Caenorhabditis elegans Prion-like-(q...    28   7.9  

>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score =  143 bits (347), Expect = 1e-34
 Identities = 74/212 (34%), Positives = 124/212 (58%)
 Frame = -3

Query: 727 KSLKLYTDFYSSDIIVASPLGLRMLVGAEGEEDRDYDFLASIEILIMDQADVFLMQNWXX 548
           K LKLY  F  +DI+V SPLGLRM++   G++  +   ++SI + I+D+ D+ L QNW  
Sbjct: 268 KVLKLYEKFEKADILVCSPLGLRMILN--GDDGNEAHLISSINMTIVDRTDIMLQQNWEN 325

Query: 547 XXXXXXXXXLQPKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNY 368
                     QP K  D D SRVR   ++G ++++ Q L+F+        S++ +   N+
Sbjct: 326 LQLIFSHLHSQPSKI-DVDISRVRKLYLDGQSRHFSQLLMFSRYSHELFTSLMLQNSQNH 384

Query: 367 AGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSH 188
            G V+ + P + G++  + + + Q  H+F      E+++ RF+YF+ +++P    +L+  
Sbjct: 385 RGLVIAK-PKQSGTLSNIEIPLCQELHKFEVKDPNETSDLRFKYFVDKIMP----SLIPR 439

Query: 187 TLIYVPSYFDYVRIRNYFKKEDISFVQICEYS 92
           TLI +PSYFD+VR+RN+ KK + SFV   EY+
Sbjct: 440 TLIVIPSYFDFVRVRNHLKKAEESFVMCHEYA 471


>Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical
           protein K09B11.2 protein.
          Length = 549

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -3

Query: 310 LQIPQIFHRFNASTALESAEARFEYFIKEVLPKQRDTLMSHTLIYVPSYFDYVRIRNYFK 131
           + +P I   F +  + + A  +F   +KEV PK  + +M       PS F + +I + F 
Sbjct: 66  MDVPAILQVFKSGPSYKHARLKFR--LKEVAPKNYEKIMEMIGTTEPSVFIFSKILD-FA 122

Query: 130 KEDISFV 110
           +E +S V
Sbjct: 123 EETVSGV 129


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 7/24 (29%), Positives = 21/24 (87%)
 Frame = -3

Query: 637 EEDRDYDFLASIEILIMDQADVFL 566
           EED +YD++ +++I +++++++F+
Sbjct: 697 EEDINYDYMDNVQIFVVEESEIFI 720


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 490 FSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNYAGKVLVE 347
           F R  SW + G  KY++   +  +  L    ++++K CH    K  V+
Sbjct: 725 FYRAISWCLTGSQKYHKALRIATANYLRNDIAIVDKYCHKTDHKTYVQ 772


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -3

Query: 514 PKKTHDTDFSRVRSWAVNGWAKYYRQTLVFASVLLPEIKSVLNKKCHNYAGKVLVENPVE 335
           PK   DT  S+       GW  Y    L +A +  P   +  NK+C +Y GK+      +
Sbjct: 319 PKTPFDT--SKCTVMCSTGWVYY--NNLCYAKLQGPGRLNDFNKECISYGGKIAEIPDAQ 374

Query: 334 VGSIQQVLLQI 302
           V  + + L  I
Sbjct: 375 VNDVLRNLKTI 385


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 307 VTILVEYSPLLQDSPRALSRRSYGISY 387
           +T  + +SPL+ DSP  L+R S G++Y
Sbjct: 299 LTFAMWHSPLIYDSPWNLTRCSKGVAY 325


>AC006633-5|AAO21429.1|  506|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform b protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 616 NHNLCLPPLQLRPTFVDQVVMRL*CLMS 699
           +HN C  P++    F+ +V+MRL C ++
Sbjct: 471 HHNKCFLPIKTPSIFIQRVMMRLKCKLT 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,644
Number of Sequences: 27780
Number of extensions: 300570
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)