Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e11
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 112  VQICEYSKVGDNVIAL*IYCNT 47
            +Q+  +++VGD V     YC T
Sbjct: 1188 IQVLAFTRVGDGVPTTVTYCQT 1209


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 112  VQICEYSKVGDNVIAL*IYCNT 47
            +Q+  +++VGD V     YC T
Sbjct: 1184 IQVLAFTRVGDGVPTTVTYCQT 1205


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -3

Query: 442 RQTLVFASVLLPEIKSVLNKKCHNYAGKVLVENPVEVGSIQQVLLQIPQIFHRFNASTAL 263
           RQTL+F++    E++ +  +  +NY         + VG +      + Q F+        
Sbjct: 383 RQTLMFSATFPDEVQHLARRFLNNYLF-------LAVGIVGGACSDVEQNFY-------- 427

Query: 262 ESAEARFEYFIKEVLPKQRDT-LMSHTLIYV 173
           E A  + +  +KE+L ++ D+  +  TL++V
Sbjct: 428 EVARNKKKDLLKEILERENDSGTLGGTLVFV 458


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 391 LNKKCHNYAGKVLVENP--VEVGSIQQVLLQ 305
           + +KC    GK   ENP  ++ G    V+LQ
Sbjct: 375 IKEKCDRRTGKTTEENPKSIKSGDAAIVMLQ 405


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 391 LNKKCHNYAGKVLVENP--VEVGSIQQVLLQ 305
           + +KC    GK   ENP  ++ G    V+LQ
Sbjct: 86  IKEKCDRRTGKTTEENPKSIKSGDAAIVMLQ 116


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 122 VFFLKIIPYAHVIEVARHVDERVTHEGVTLLGQN 223
           V F++++P   +IE  +  ++    E V ++G+N
Sbjct: 339 VVFIQVLPRFLLIERPKKDEDEEEEEEVVVVGRN 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,138
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)