Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e07
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.33 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.57 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 623  WTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPLPGS 498
            W+S ++   W  T    +  +R   +S   RPT  ++P  G+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGT 1084



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 584  PVSTSHWSRTRQSSLPRRPT 525
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 371  PSKPSVLSNSSTGVQPVSRSVSTTSHP 291
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 308  STTSHPPWCPEATWPRFNVPSACCPTPPPSLK 213
            STT++P W P   W     P++  P  P  LK
Sbjct: 1362 STTNYPEWQP-TEWHPPIPPTSEKPPLPEELK 1392


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 257 NVPSACCPTPPPSLKLGLALTT 192
           N P++   TPPP+ ++GL + T
Sbjct: 425 NSPASMNQTPPPTAQMGLDMVT 446



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 381 PRSHPWVRRHHGTAYSKPCTCHDGDRISPSGWRARSMRL 497
           PRS    RR+ G A      C + +R+ P+G   R   +
Sbjct: 279 PRSQ---RRYTGRATCDCPNCQEAERLGPAGVHLRKKNI 314


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -3

Query: 403 RTQGCERGHRYHQNQAYYPIRRLVSNRFQGRY--QLPATHRGARRRLGQGSTCRL 245
           R    ER      N  +  +R+ +       +  Q P+T RGA ++L +  T RL
Sbjct: 89  RRNARERNRVKQVNNGFATLRQHIPASVAAAFAPQGPSTGRGASKKLSKVETLRL 143


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 36  PHPRLQRSPCRLLRNPFRGQPGP 104
           PHP L   P  L  +P    PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 36  PHPRLQRSPCRLLRNPFRGQPGP 104
           PHP L   P  L  +P    PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 314 SVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSV 165
           ++STT  P W    + P  +       TP P   +    +TS+T  T +V
Sbjct: 403 TISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVP-EKSTSTTQRTTTV 451


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 434 WLAVCCTVVTSYPRM 390
           W  VC  VV  YPR+
Sbjct: 166 WREVCTFVVQVYPRL 180


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 226 GGVGQHADGTLNLGQVASGHHGGWLVVDTDLETGWTPVDELDS 354
           GGV + +DG   +    SG +G    +DT  E    P   LD+
Sbjct: 388 GGVCRISDGGGYICDCPSGTNGTNCEIDTINECDSNPCKHLDA 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,090
Number of Sequences: 336
Number of extensions: 4675
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)