Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18e07
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 374 e-105
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 372 e-104
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 158 6e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 91 1e-19
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 42 6e-05
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 37 0.003
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.088
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 31 0.12
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 31 0.15
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.15
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.20
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.27
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.27
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.36
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.47
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 29 0.82
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.82
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.3
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.7
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 7.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 374 bits (920), Expect = e-105
Identities = 167/209 (79%), Positives = 188/209 (89%)
Frame = -1
Query: 681 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAG 502
I Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV
Sbjct: 235 IAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQE 294
Query: 501 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 322
ITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTG
Sbjct: 295 ITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTG 354
Query: 321 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 142
FK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVG
Sbjct: 355 FKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVG 414
Query: 141 EGMEEGEFSEAREDLAALEKDYEEVGMDS 55
EGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 415 EGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 372 bits (916), Expect = e-104
Identities = 167/209 (79%), Positives = 187/209 (89%)
Frame = -1
Query: 681 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAG 502
I Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV
Sbjct: 231 IAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQE 290
Query: 501 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 322
ITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTG
Sbjct: 291 ITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTG 350
Query: 321 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 142
FK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVG
Sbjct: 351 FKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVG 410
Query: 141 EGMEEGEFSEAREDLAALEKDYEEVGMDS 55
EGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 411 EGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 158 bits (384), Expect = 6e-40
Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 3/211 (1%)
Frame = -1
Query: 681 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAG 502
+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV
Sbjct: 229 VSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPE 288
Query: 501 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG 322
+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P
Sbjct: 289 LTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDN 348
Query: 321 FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 142
+ PP DL + + + N+T+I E + RL +F M+ ++AF+HWY G
Sbjct: 349 VLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTG 400
Query: 141 EGMEEGEFSEAR---EDLAALEKDYEEVGMD 58
EGM+E EF+EA DL + + Y+E G+D
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 91.1 bits (216), Expect = 1e-19
Identities = 56/210 (26%), Positives = 105/210 (50%), Gaps = 7/210 (3%)
Frame = -1
Query: 681 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLS 511
+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E + +
Sbjct: 232 VSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTT 291
Query: 510 VAGITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 334
V + P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W
Sbjct: 292 VLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPW 351
Query: 333 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 154
P +V ++ + P + ++ + ML+N T+IA + R ++D + + AF+
Sbjct: 352 GPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLE 406
Query: 153 WYVGEGMEE---GEFSEAREDLAALEKDYE 73
Y E + E EF +R+ +A L +YE
Sbjct: 407 QYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 42.3 bits (95), Expect = 6e-05
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 4/181 (2%)
Frame = -2
Query: 620 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPLPGSQTHASSPPTRW*NAIPVMA 441
+S S+ +T + P STS S + NS PLP + T ++ +IP
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS-----TSIPPTG 295
Query: 440 STWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST-TSHPPWCPEATWP 264
++ V TV + + P P+ S SS+ + S S +T TS PP T
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355
Query: 263 RFNVP---SACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWL 93
VP ++ TPPP T+SS + S SCT TS + +S PV +
Sbjct: 356 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTST-SCT-TSTSIPPTGNSTTPVTPTV 413
Query: 92 P 90
P
Sbjct: 414 P 414
Score = 33.9 bits (74), Expect = 0.022
Identities = 48/163 (29%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
Frame = -2
Query: 587 TPVSTSHWSRTRQSSLPRRPTMNSFPLPGSQTHASS----PPTRW*NAIPVMASTWLAVC 420
TP+ T S T +S +S PLP + T ++ PPT +++ + +
Sbjct: 85 TPIITESTSSTSSASTTGS---SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT 141
Query: 419 CTVVTSYPRM*TRPSLP---SKP----SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPR 261
T TS P T S S P S +ST + P S S ++ P P T P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLST--PITP--TVPP 197
Query: 260 FNVPSACCPTPPPSLKL----GLALTTSSTSCTPSVLSCTGTS 144
+ S P PP S L T+STSCT S TG S
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 36.7 bits (81), Expect = 0.003
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 9/205 (4%)
Frame = -2
Query: 611 SSRLTWCLTPVSTSHWSRTRQSSLPR--RPTMNSFPLPGSQTHASSPPTRW*NAIPVMAS 438
+S ++ + ++ H QS P P +++ PLP S PP +P + S
Sbjct: 110 ASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHN-PLPVSCQPVLRPPP-----VPQVPS 163
Query: 437 TWLAVCCTVVTSYPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEA 273
W YP P+LP SKP V+ N V P +R + P+
Sbjct: 164 HW----------YPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPT 212
Query: 272 TWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPVRT 99
++P P+ CP+ PP L A+ SS S ++ + T + + P +
Sbjct: 213 SYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAV 272
Query: 98 WLPSKRITKKSAWTPLKARVREPKS 24
WLP + T + P A V +P S
Sbjct: 273 WLPMTQPT----FQPPSANVYQPAS 293
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.088
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 251 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 78
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 77 TKKSAWTPLKARVREPKSTK 18
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = -2
Query: 368 SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTS 189
S P+ S + PVS + T + PP A R N A P + + A T S
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 188 STSCTPSVLSCTGTSVRVWRRESSP 114
++ PS ++ +S + S+P
Sbjct: 1059 ASKPAPSTVTSAASSPSNISKPSAP 1083
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 507 AGITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 376
+G+ ACFEP N C H K C L + KD N ++
Sbjct: 359 SGLCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.15
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -2
Query: 359 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 180
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 179 CTP--SVLSCTGTS 144
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
Score = 30.3 bits (65), Expect = 0.27
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 2/151 (1%)
Frame = -2
Query: 587 TPVSTSH--WSRTRQSSLPRRPTMNSFPLPGSQTHASSPPTRW*NAIPVMASTWLAVCCT 414
TP+++S+ + T S+ N+ L S T +S+P + + AS+
Sbjct: 253 TPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVN 312
Query: 413 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCP 234
T+ T S S + + +ST P+S STT+ T ++
Sbjct: 313 STTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 372
Query: 233 TPPPSLKLGLALTTSSTSCTPSVLSCTGTSV 141
TP S+ A + SST T S S T TSV
Sbjct: 373 TPLTSVNSTSATSASSTPLT-SANSTTSTSV 402
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 413 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 279
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -2
Query: 542 LPRRPTMNSFPLPGSQTHASSPPTRW*NAIPVMA---STWLAVCCTVVTSYPRM*TRPSL 372
+P P++ P+ S P R A+PV+ S VV P + RP++
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQR--PAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655
Query: 371 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 279
P P S PV V + PP P
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.27
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 359 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 183
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 182 SCTPSVLS 159
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.27
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 359 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 183
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 182 SCTPSVLS 159
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.9 bits (64), Expect = 0.36
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Frame = -2
Query: 614 PSSRLTWCLTPV--STSHWSRTRQSSLPRRPTMNSFPLPGSQTHASSPPTRW*NAIPVMA 441
P+S +T TPV S+S S S T S GS T +SSP + IP
Sbjct: 246 PTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSV 305
Query: 440 STWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPR 261
+ ++ + +SY +L + + ++ + TG + S + TS PP+ ++
Sbjct: 306 PSSVSSFTSSSSSYTT-----TLTASNTSVTYTGTG----TGSATFTSSPPFYSNSSVIP 356
Query: 260 FNVPSACCPTPPPSLKLGLALTTSSTSCT 174
+VPS+ + LT S+TS T
Sbjct: 357 TSVPSSVSSFTSSNSSYTTTLTASNTSIT 385
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 371 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 207
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -2
Query: 377 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 201
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 200 LTTSSTSCTP 171
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 308 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 222
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.7 bits (61), Expect = 0.82
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Frame = -2
Query: 551 QSSLPRRPTMNSFPLPGSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSL 372
++ L R P+ + PL H S PP IP + +T ++ P + RPSL
Sbjct: 350 RAPLQRTPSGSLTPLSSRPAHTSLPP------IPTVQTT--------SSNVPPV-NRPSL 394
Query: 371 PSK-PSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTP-PPSLKLGLAL 198
SK PSV + S + P+S S + P++ P SA TP PSL+
Sbjct: 395 KSKSPSVSNILSNQLSPIS-SANNDVMARLQPKSPIPATKSYSATIQTPRSPSLR----- 448
Query: 197 TTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS 87
STS V TSV+ + +S V + PS
Sbjct: 449 RADSTSHIIKVPHLPDTSVKTAKTGASEIDVLSRYPS 485
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.82
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = -2
Query: 407 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 237
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 236 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 105
P P P+ + ++S P + + + S PV
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 368 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 222
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 317 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 159
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 377 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 291
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 373 SDGRVHILGYDVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDPGNGKLFMVGLLGRDDW 552
S G +LGY ++ A++V+A + + HL+ G D K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 553 RVRDQWEVDTGVR 591
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -2
Query: 410 VTSYPRM*TRPSLP--SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 237
+T+ R T+P+ P S+ +N + S S+ S P +A +VP +
Sbjct: 498 LTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGA 557
Query: 236 PTPPPSLKLGLALTTSSTSCTPSVLSCTGT 147
S LA SS S +L C GT
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGT 587
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 380 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 285
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,468
Number of Sequences: 5004
Number of extensions: 72230
Number of successful extensions: 302
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -