Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e04
         (454 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    23   5.0  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   6.7  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   6.7  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   8.8  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    22   8.8  

>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 12  TPGSMXN*G*SVSQFQRESVGRSLSCGFASENDPRSLNL 128
           TPG     G +VSQ+   +  RS  C + +  D   L+L
Sbjct: 447 TPGLQCGTG-AVSQYAMNAAKRSFDCSYDTRIDLGQLSL 484


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  RVICFTISEGECRSITLLWIR 97
           R +C+ +SE E   I +L+ R
Sbjct: 88  RSVCYYVSESEMEKIEMLFAR 108


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 75  RSLSCGFASENDPRSLNLHHKEFYGW 152
           R   C    E + R  N++ +EFY W
Sbjct: 377 RYAECSKRKEQN-RMFNINEREFYNW 401


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 319 ETPGRGLPYSPHQDHSYFSQCALTR 245
           E PG  +P  PH   SY S   + +
Sbjct: 360 EMPGMSVPPQPHTHPSYGSPAEIPK 384


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 377 SAGIQQATWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAM 258
           S   +  +W      +K  R PR+R P F +S   ++L +
Sbjct: 280 SRSTRPTSWPRSRPTSKPKRLPRRRRPFFFSSWWCIILVL 319


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,020
Number of Sequences: 2352
Number of extensions: 10878
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)