Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e03
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   169   3e-43
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.2  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   4.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.2  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   5.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.4  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   7.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.7  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  169 bits (411), Expect = 3e-43
 Identities = 82/145 (56%), Positives = 102/145 (70%)
 Frame = -1

Query: 663 PAQTHNPISNGVHHKILLXNFLAQTEALMKGKTADEAKAELEKSGMAPEAIDKILPHKVF 484
           P ++HNPI N  HH++L  NF AQTEALM GKT  E KAE           D+I+PHK F
Sbjct: 414 PIESHNPIDNNKHHRMLFSNFAAQTEALMLGKTPAEVKAE--------GTPDEIVPHKTF 465

Query: 483 KGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAIEPE 304
            GNRP+NSI+ KKITP +LGALIA YE   FT+G +W+INS+DQ+GVELGK+LAK +  +
Sbjct: 466 VGNRPSNSIIAKKITPASLGALIAFYEWVTFTEGAVWNINSFDQFGVELGKKLAKNVLAQ 525

Query: 303 LQGSAAVTSHDASTNGLINFLKKNF 229
           L+    V +HD+STNGLIN  K  F
Sbjct: 526 LETKGDVENHDSSTNGLINLFKNGF 550


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 444 ITPFTLGALIAMYEHKIFTQGVIWDINSYD 355
           +T  TLG LI M  H   T GV +++N Y+
Sbjct: 179 LTVATLGDLIGMVGHLNDTSGVDFNLNEYN 208


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 10  MVFKNIYANKTSNIVLCSKLTNIRSL*LLMMFYIVHN*ELRTFNSGKYICLD 165
           +++KNI A       LC+K+  +R L L   FY  H+     F + + I LD
Sbjct: 632 LMYKNI-AKMQEIRKLCNKIQTVRQLQLPQPFYYEHHKSHVPFANNEPILLD 682


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 356 SYELISQITPCVKILCSYMAISAPKVNGVIFFRTIEFVG 472
           +Y L+++  PC    C++  IS P V+    F   EFVG
Sbjct: 277 TYNLLNKDKPCSMDPCNFDGISIPPVD----FANTEFVG 311


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 567 TADEAKAELEKSGMAPEAIDKI 502
           T +EA   LEKSG+AP+ + +I
Sbjct: 29  TGEEAVPFLEKSGLAPQVLGQI 50


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 133 TFNSGKYICLDYIIYNH 183
           +FNS  ++C+D I +NH
Sbjct: 228 SFNSSDFLCMDAIDFNH 244


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 67   VLNKEQCLRSCLHIY 23
            +LNK  C+ SC+ +Y
Sbjct: 1039 ILNKNDCIESCIFVY 1053


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 469 HKLYCSEEDHSIHFRSTYCHVRTQDLHAR 383
           H++ CS   +SI    TY  V  QD + R
Sbjct: 9   HRVLCSLHQNSISTHKTYVAVAAQDEYVR 37


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 359 YELISQITPCVKILCSYMAISAPKVNGVIFFRTIEFVG 472
           Y LIS   P  K+  SY  +S  K NGV   RTI+  G
Sbjct: 612 YFLISN--PKEKVQLSYQKMSKSKHNGVDPIRTIQKYG 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,837
Number of Sequences: 5004
Number of extensions: 57468
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)