Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18e03
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 102 2e-22
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 101 5e-22
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 47 1e-05
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 44 1e-04
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 29 2.5
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 29 2.5
05_03_0255 + 11100083-11100158,11100244-11100391,11101372-111015... 29 2.5
11_06_0668 + 26081554-26082082,26082241-26082947 29 3.3
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 29 4.4
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 102 bits (245), Expect = 2e-22
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Frame = -1
Query: 627 HHKILLXNFLAQTEALMKGK--TADEAKAELEKSGMAPEAIDKILPHKVFKGNRPTNSIV 454
+H L+ NF AQ +AL GK T E S PE ++PHK F+GNRP+ S++
Sbjct: 428 NHDELMSNFFAQPDALAYGKQFTGYFQTPEQLHSEKVPE---HLIPHKTFQGNRPSLSLL 484
Query: 453 LKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAIEPELQGSAA---- 286
L ++ + +G L+A+YEH+I QG +W INS+DQWGVELGK LA + L S
Sbjct: 485 LPSLSAYEIGQLLAIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRVEGKP 544
Query: 285 VTSHDASTNGLI 250
V ++ST L+
Sbjct: 545 VLGFNSSTTSLL 556
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 101 bits (242), Expect = 5e-22
Identities = 48/112 (42%), Positives = 71/112 (63%)
Frame = -1
Query: 627 HHKILLXNFLAQTEALMKGKTADEAKAELEKSGMAPEAIDKILPHKVFKGNRPTNSIVLK 448
+H L+ NF AQ +AL GKT ++ +E PE ++ HK F+GNRP+ S++L
Sbjct: 422 NHDELMSNFFAQPDALAYGKTPEQLHSE-----KVPE---HLISHKTFQGNRPSLSLLLP 473
Query: 447 KITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAIEPELQGS 292
++ + +G L+++YEH+I QG +W INS+DQWGVELGK LA + L S
Sbjct: 474 SLSAYEIGQLLSIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHAS 525
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/56 (35%), Positives = 37/56 (66%)
Frame = -1
Query: 489 VFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLA 322
++ +R + S+ ++++TP +GAL+A+YE + + +IN+Y Q GVE GK+ A
Sbjct: 484 LYSNDRESISVTVQEVTPRAVGALVALYERAVGIYASLVNINAYHQPGVEAGKKAA 539
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/56 (32%), Positives = 36/56 (64%)
Frame = -1
Query: 489 VFKGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLA 322
++ +R + ++ ++++ P +GAL+A+YE + + +IN+Y Q GVE GK+ A
Sbjct: 475 LYANDRESITVTVQEVNPRAVGALVALYERAVGLYAYLININAYHQPGVEAGKKAA 530
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +2
Query: 239 LRKLMSPFVEASWLVTAADPCSSGSIALANCLPSSTPH*SYELISQITPCVKILCSYMAI 418
+ L+S + EA W DPC S + C + P I I+ K + + +
Sbjct: 373 MASLVSRYPEAGWAQEGGDPCLPASWSWVQCSSEAAPR-----IFSISLSGKNITGSIPV 427
Query: 419 SAPKVNGVIFFRT--IEFVGRFPLNTLC 496
K++G++ + F G+ P T C
Sbjct: 428 ELTKLSGLVELKLDGNSFTGQIPDFTGC 455
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +2
Query: 239 LRKLMSPFVEASWLVTAADPCSSGSIALANCLPSSTPH*SYELISQITPCVKILCSYMAI 418
+ L+S + EA W DPC S + C + P I I+ K + + +
Sbjct: 376 MASLVSRYPEAGWAQEGGDPCLPASWSWVQCSSEAAPR-----IFSISLSGKNITGSIPV 430
Query: 419 SAPKVNGVIFFRT--IEFVGRFPLNTLC 496
K++G++ + F G+ P T C
Sbjct: 431 ELTKLSGLVELKLDGNSFTGQIPDFTGC 458
>05_03_0255 +
11100083-11100158,11100244-11100391,11101372-11101559,
11101648-11101819,11102637-11102839,11103640-11103762,
11103838-11103941,11105579-11105713
Length = 382
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 39 DLKHCSLFKTNEYQVVMIIDDVLYCAQLRTKNFQFRQIHMSRLHNI*PLKQIKLCVTSF 215
D+ C ++T+ + ++D + YC Q +NF ++ ++ +H LKQI + + F
Sbjct: 301 DISGCDDYETD----LSVLDMLRYCIQHAEQNFPIKKNYLLEMHGRETLKQIAVGLMGF 355
>11_06_0668 + 26081554-26082082,26082241-26082947
Length = 411
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 247 VNESIRGSVVAGHSCRPLQFRLDCLGQLLAEFNS 348
+ + I G+V CR L R+ C+G LL E S
Sbjct: 13 IAQEIAGAVSTVSRCRKLANRVQCIGDLLRELES 46
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 227 QKFFLRKLMSPFVEASWLVTAADPCSSGSIAL 322
Q+FFL+ ++ F W V D CSS +++
Sbjct: 641 QRFFLQVIVPIFQHEEWTVFFVDTCSSNQVSV 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,924
Number of Sequences: 37544
Number of extensions: 376667
Number of successful extensions: 809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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