Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e03
         (663 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   1.6  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    24   4.9  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    23   8.6  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 591 TEALMKGKTADEAKAELEKSGMAPEAIDKILPHK 490
           T  L+K K  DEA+  +EKS  + E+I ++ P K
Sbjct: 168 TMELVKSKLLDEAQKRMEKSHQS-ESILRVGPEK 200


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 490 GVQRKPAHKLYCSEEDHSIHFRSTY 416
           G++    HKL+   +D+ +H R+ +
Sbjct: 380 GIKCTICHKLFSQRQDYQLHMRAIH 404


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = +1

Query: 22  NIYANKTSNIVLCSKLTNIRSL*LLMMFYIVHN*ELRTFNSGKYICLDYIIYNH*SKLNY 201
           N+  +   N+++   +  +    L ++   + N  LR FN+   ICL+ ++    S L++
Sbjct: 180 NLRKDLGGNVIVIGAVFALAPQILTIIILFLRNRRLRHFNAFYPICLNLLLALIASNLSF 239

Query: 202 V 204
           +
Sbjct: 240 I 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,411
Number of Sequences: 2352
Number of extensions: 14531
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)