Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18e03
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical ...   231   4e-61
AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical ...   231   4e-61
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF016446-9|AAC24169.2|  340|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8b protein.
          Length = 586

 Score =  231 bits (564), Expect = 4e-61
 Identities = 108/144 (75%), Positives = 122/144 (84%)
 Frame = -1

Query: 663 PAQTHNPISNGVHHKILLXNFLAQTEALMKGKTADEAKAELEKSGMAPEAIDKILPHKVF 484
           P +T NPI  G+HH+ILL NFLAQTEALMKGKTA  A+AEL+ SGM+PE+I KILPHKVF
Sbjct: 442 PVKTLNPIRGGLHHQILLANFLAQTEALMKGKTAAVAEAELKSSGMSPESIAKILPHKVF 501

Query: 483 KGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAIEPE 304
           +GN+PT SIVL  +TPFTLGALIA YEHKIF QG+IWDI SYDQWGVELGKQLAK I+PE
Sbjct: 502 EGNKPTTSIVLPVVTPFTLGALIAFYEHKIFVQGIIWDICSYDQWGVELGKQLAKVIQPE 561

Query: 303 LQGSAAVTSHDASTNGLINFLKKN 232
           L  +  VTSHDASTNGLI F+K N
Sbjct: 562 LASADTVTSHDASTNGLIAFIKNN 585


>AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8a protein.
          Length = 551

 Score =  231 bits (564), Expect = 4e-61
 Identities = 108/144 (75%), Positives = 122/144 (84%)
 Frame = -1

Query: 663 PAQTHNPISNGVHHKILLXNFLAQTEALMKGKTADEAKAELEKSGMAPEAIDKILPHKVF 484
           P +T NPI  G+HH+ILL NFLAQTEALMKGKTA  A+AEL+ SGM+PE+I KILPHKVF
Sbjct: 407 PVKTLNPIRGGLHHQILLANFLAQTEALMKGKTAAVAEAELKSSGMSPESIAKILPHKVF 466

Query: 483 KGNRPTNSIVLKKITPFTLGALIAMYEHKIFTQGVIWDINSYDQWGVELGKQLAKAIEPE 304
           +GN+PT SIVL  +TPFTLGALIA YEHKIF QG+IWDI SYDQWGVELGKQLAK I+PE
Sbjct: 467 EGNKPTTSIVLPVVTPFTLGALIAFYEHKIFVQGIIWDICSYDQWGVELGKQLAKVIQPE 526

Query: 303 LQGSAAVTSHDASTNGLINFLKKN 232
           L  +  VTSHDASTNGLI F+K N
Sbjct: 527 LASADTVTSHDASTNGLIAFIKNN 550


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 555 AKAELEKSGMAPEAIDKILPHKVFK---GNRPTNSIVLKKITPFTLGAL 418
           AKA +E+SG+APE I++++   V     G   T  I L    P T  A+
Sbjct: 36  AKAAIERSGVAPEKIEEVIGGCVLPAGLGQNVTRQISLSAGLPVTTQAV 84


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 639 SNGVHHKILLXNFLAQTEALMKGKTADEAKAELEKSG 529
           + G  H++ + N +A T+ L+ G     AKA  E+ G
Sbjct: 537 NRGSDHRLSVPNLIAATDPLVPGSVGQSAKALRERLG 573


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 246 FLKKNF*DYSRMTSHII*FASVVIYYVIETYVFAGIESS*F 124
           +L+KNF  Y  M SH    +   +   + T+VF G   S F
Sbjct: 553 YLRKNFQGYPAMVSHQNRLSVAFLLQALLTFVFCGFPDSIF 593


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 299  CSSGSIALANCLPSSTPH*SYELISQITPC 388
            C SG  A++ C P+ +    YE +S +  C
Sbjct: 1314 CPSGDTAVSGCFPNGSCGTGYECVSSLNLC 1343


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 299 CSSGSIALANCLPSSTPH*SYELISQITPC 388
           C SG  A++ C P+ +    YE +S +  C
Sbjct: 656 CPSGDTAVSGCFPNGSCGTGYECVSSLNLC 685


>AF016446-9|AAC24169.2|  340|Caenorhabditis elegans Hypothetical
           protein C02E7.10 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 483 KGNRPTNSIVLKKITPFTLGALIAMYEHK 397
           KG++P   ++L+K+ P+        YEHK
Sbjct: 259 KGSQPNLDLILEKLIPYLFPDACMEYEHK 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,780
Number of Sequences: 27780
Number of extensions: 331511
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)