Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18e01
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 70 9e-14
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.35
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 26 1.4
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 2.4
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 4.3
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 5.6
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 24 5.6
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 24 5.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.6
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 7.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 7.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 9.8
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 23 9.8
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.8
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 70.1 bits (164), Expect = 9e-14
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 125
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 124 XXXXXXKIVLRLEV--CRLQGEI 62
K+VLRLE C+ + ++
Sbjct: 61 KAKVTKKVVLRLECVSCKYKNQL 83
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.35
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 189 PWAACLSLDFLYCDTLCTLWHL 254
P A + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700
Score = 23.4 bits (48), Expect = 9.8
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 288 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 109
YQ S R + N + T + + SPR +LP+ + ++ +T S++R+
Sbjct: 1200 YQESKKRIS-NGSPTSWNLL-TKPSPRSASLPKNSQPLSISEIMTEQKEEIESQKRRSSF 1257
Query: 108 RK 103
RK
Sbjct: 1258 RK 1259
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 26.2 bits (55), Expect = 1.4
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 108 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 287
L+VF FF+ G LR R+L S+ F + L TL+H + + + C G
Sbjct: 40 LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92
Query: 288 TFTIFE 305
F +F+
Sbjct: 93 FFNLFK 98
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 2.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 84 CADCKVRFTGCH 49
C+DCK+ F CH
Sbjct: 420 CSDCKIDFIACH 431
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 225 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 139
ST+ PR T E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 2 SWSPPEPQRWXCNLLQWQPVNLTLQSAHLKTEHNFL 109
+W+ PQR LL+W P Q ++L + N L
Sbjct: 354 AWNIKHPQRVNPKLLRWTPYLGEEQISNLLLKENIL 389
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 24.2 bits (50), Expect = 5.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 261 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSV 91
K +A K R H+ + + V ++ V SPNP S +R+K R+ S+
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSM 296
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 24.2 bits (50), Expect = 5.6
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = -1
Query: 261 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLRC 82
K++ K T Y + P K ++ + S + NP SK L + ++LR
Sbjct: 32 KSILKNKATFYELLEVPTKASIKEINRAYRKKSILYHPDKNPKSKELYTLLGLIVNILRN 91
Query: 81 ADCKVRF 61
+ + R+
Sbjct: 92 TETRKRY 98
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 213 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 130
P+K + P+V +M +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 23.8 bits (49), Expect = 7.5
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +1
Query: 28 VALQSPSMATCESHLAIGTPQ-DGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRA 204
V + +P++ ++++ + D W L W WT + ++Y + + R
Sbjct: 1195 VYVAAPTIMVVDTYVILNQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRI 1254
Query: 205 FPWTFCTVIPCVLCGIYIFC 264
F VLCG + C
Sbjct: 1255 FR---TPNFWAVLCGTIVSC 1271
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -1
Query: 216 SPRKGTLPRVEDVMIVNSRVTVVSPNP 136
SP +G+LPR ++ + +++ NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 132 SKRRQKPL-RKLCSVLRCADCKVRFTGC 52
++RR+ P+ R+ VL C +CK R C
Sbjct: 23 NRRRRVPMERRRRVVLACFNCKARKVRC 50
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 23 QRWXCNLLQWQPVNLTLQSAHLK 91
+ W +QW P+ L S HL+
Sbjct: 192 ENWTETYVQWSPMGTYLVSLHLR 214
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 259 FCSTSCAVLVRSPFLS 306
FC++ C + VRSP +S
Sbjct: 912 FCNSDCELPVRSPIVS 927
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,341
Number of Sequences: 5004
Number of extensions: 25808
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -