Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18e01
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 72 1e-13
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 72 1e-13
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 72 1e-13
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 70 6e-13
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 70 6e-13
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 70 6e-13
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 70 6e-13
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 29 0.95
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 1.3
12_02_0879 + 23960084-23961551,23961796-23962184 28 1.7
01_01_1106 + 8750597-8754031 28 1.7
05_05_0226 + 23442971-23443857,23444209-23446324 28 2.2
11_06_0050 + 19631164-19631987,19632103-19634023 27 2.9
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 27 3.9
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 27 5.1
11_01_0266 - 2010572-2011879 26 6.7
06_01_0302 + 2188905-2188989,2189309-2189406,2189487-2189753,218... 26 8.9
04_04_0885 - 29086426-29086767 26 8.9
04_04_0142 - 23084685-23085128 26 8.9
01_06_0512 + 29942429-29942929 26 8.9
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 71.7 bits (168), Expect = 1e-13
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 125
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 124 XXXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 61 KAKTTKKIVLKLQ-CQSCKHYSQHPIK 86
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 71.7 bits (168), Expect = 1e-13
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 125
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 124 XXXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 61 KAKTTKKIVLKLQ-CQSCKHYSQHPIK 86
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 71.7 bits (168), Expect = 1e-13
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 125
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 124 XXXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 61 KAKTTKKIVLKLQ-CQSCKHYSQHPIK 86
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 69.7 bits (163), Expect = 6e-13
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = -3
Query: 295 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 122
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 121 XXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 90 AKTTKKIVLKLQ-CQSCKHYSQHPIK 114
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 69.7 bits (163), Expect = 6e-13
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = -3
Query: 295 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 122
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 121 XXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 90 AKTTKKIVLKLQ-CQSCKHYSQHPIK 114
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 69.7 bits (163), Expect = 6e-13
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = -3
Query: 295 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 122
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 88
Query: 121 XXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 89 AKTTKKIVLKLQ-CQSCKHYSQHPIK 113
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 69.7 bits (163), Expect = 6e-13
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = -3
Query: 295 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 122
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 121 XXXXXKIVLRLEVCRLQGEIHRLPLK 44
KIVL+L+ C+ + P+K
Sbjct: 90 AKTTKKIVLKLQ-CQSCKHYSQHPIK 114
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 29.1 bits (62), Expect = 0.95
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 225 STKSPRKGTLPRVEDVMIVNSRV 157
++ SP+K T PRVED M++ S +
Sbjct: 451 ASSSPQKQTAPRVEDDMVITSSI 473
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 279 SAGRTAKNVNATKYTRYHSTKSPRKGTLPR 190
S+GRTA++ + R+H T RKG LPR
Sbjct: 99 SSGRTARDAAVAQQERHHDTIKRRKG-LPR 127
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -1
Query: 291 TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKP 112
T ++S G +K V ATK+ R +S +P+V+++ V S TV+ + S RQ
Sbjct: 315 TIESSNG--SKVVRATKFNRDKKFRSTVASNVPKVKEIK-VTSPATVMDQS-SKPTRQSK 370
Query: 111 LRKL 100
L+ L
Sbjct: 371 LKSL 374
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 168 LRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRC 281
L+S LL C +L+ L DT+C+L +LHFL + RC
Sbjct: 540 LQSLHLLNLKGCGNLEILP-DTICSLQNLHFLN-LSRC 575
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 180 RLLPWAACLSLDFLYCDTLCTLWHLHFLQY 269
R+L C LD + +C LWHL +L +
Sbjct: 595 RVLDLQECSDLDDDHLKYICKLWHLKYLSF 624
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 180 RLLPWAACLSLDFLYCDTLCTLWHLHFLQ 266
R+L ++ C ++ +C +C L+HL +L+
Sbjct: 577 RVLDFSGCDKVENQHCKDICKLFHLRYLR 605
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 27.1 bits (57), Expect = 3.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 20 PQRWXCNLLQWQP 58
P++W C++LQW P
Sbjct: 599 PKKWKCSMLQWLP 611
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 249 ATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSS 130
+T T + + K P G++ + NS V +V P PS+
Sbjct: 821 STNITNFANLKEPFDGSIDLANVENVTNSNVVMVQPVPST 860
>11_01_0266 - 2010572-2011879
Length = 435
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 229 SQYKKSKERHAAQGRRRYDR 170
S+ +K+++RH A+G+ YD+
Sbjct: 3 SEKRKTRDRHGARGKASYDK 22
>06_01_0302 +
2188905-2188989,2189309-2189406,2189487-2189753,
2189906-2189947,2190071-2190078,2190230-2190273,
2190615-2190695,2190779-2190907,2191017-2191114,
2191188-2191448,2191537-2191581,2191748-2191881,
2191965-2192045,2192127-2192308,2192632-2192746,
2192873-2193056,2193144-2193329
Length = 679
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 180 RLLPWAACLSLDFLYCDTLCTLWHLHF 260
RL+PW L FL C T C + L +
Sbjct: 349 RLVPWTGTLDCQFLACST-CKITKLKY 374
>04_04_0885 - 29086426-29086767
Length = 113
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 13 TGASKVALQSPSMATCESHLAIGTPQ 90
TGAS+ A P+ ESH +G P+
Sbjct: 21 TGASRTAAHGPADRQRESHARMGVPR 46
>04_04_0142 - 23084685-23085128
Length = 147
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 156 TVVSPNPSSKRRQKPLRKLCSVLRCADC 73
T P SKR L+K+ S+LR A C
Sbjct: 120 TAAMPRIDSKRLALALKKVSSILRLAHC 147
>01_06_0512 + 29942429-29942929
Length = 166
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 199 RAFPWTFCTVIPCVLCGIYIFCSTSCAVLVRSPF 300
RA W V+PC + G Y+ S A S F
Sbjct: 18 RAQVWACAVVVPCFIVGAYLAESYGAAAAASSFF 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,440,325
Number of Sequences: 37544
Number of extensions: 184392
Number of successful extensions: 513
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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