Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18e01
(342 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal... 80 2e-15
CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein. 80 2e-15
BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein L36a-... 80 2e-15
BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein L36a-... 80 2e-15
BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein L36a-... 80 2e-15
BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein L36a-... 80 2e-15
AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein L36a-... 80 2e-15
U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protei... 79 5e-15
CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein. 79 5e-15
BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a ... 79 5e-15
BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a ... 79 5e-15
BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a ... 79 5e-15
BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a ... 79 5e-15
AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting ... 79 5e-15
AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing prot... 79 5e-15
AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a ... 79 5e-15
AC006530-6|AAD30184.1| 391|Homo sapiens hypothetical protein pr... 31 1.2
M99564-1|AAA36477.1| 838|Homo sapiens P protein protein. 30 1.6
BC113477-1|AAI13478.1| 636|Homo sapiens potassium voltage-gated... 30 1.6
BC113475-1|AAI13476.1| 636|Homo sapiens potassium voltage-gated... 30 1.6
AL512665-2|CAI16955.1| 636|Homo sapiens potassium voltage-gated... 30 1.6
AL512665-1|CAI16956.1| 655|Homo sapiens potassium voltage-gated... 30 1.6
AL450997-2|CAI19097.1| 636|Homo sapiens potassium voltage-gated... 30 1.6
AL450997-1|CAI19096.1| 655|Homo sapiens potassium voltage-gated... 30 1.6
AL049557-3|CAB55687.2| 636|Homo sapiens potassium voltage-gated... 30 1.6
AL049557-2|CAI22711.1| 655|Homo sapiens potassium voltage-gated... 30 1.6
AF205857-1|AAF20925.1| 655|Homo sapiens potassium ionic channel... 30 1.6
AF205856-1|AAF20924.1| 636|Homo sapiens potassium ionic channel... 30 1.6
AF187964-1|AAF01045.1| 636|Homo sapiens voltage gated potassium... 30 1.6
AF187963-1|AAF01044.1| 655|Homo sapiens voltage gated potassium... 30 1.6
AF166011-2|AAF68178.1| 636|Homo sapiens voltage-gated potassium... 30 1.6
AF166011-1|AAF68177.1| 655|Homo sapiens voltage-gated potassium... 30 1.6
AL831918-1|CAD38579.1| 810|Homo sapiens hypothetical protein pr... 29 2.9
AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific prot... 29 2.9
AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein. 29 2.9
AF120491-1|AAD38898.1| 655|Homo sapiens Sha1-related potassium ... 28 6.6
AF048713-1|AAC05122.1| 655|Homo sapiens Kv4.3 potassium channel... 28 6.6
AF048712-1|AAC05121.1| 636|Homo sapiens Kv4.3 potassium channel... 28 6.6
BC107880-1|AAI07881.1| 742|Homo sapiens ZMYM6 protein protein. 28 8.7
BC033903-1|AAH33903.1| 975|Homo sapiens ZMYM6 protein protein. 28 8.7
AL607089-1|CAI12897.1| 1325|Homo sapiens zinc finger, MYM-type 6... 28 8.7
AF055470-1|AAD15797.1| 723|Homo sapiens ZNF258 protein. 28 8.7
>M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal
protein mRNA, complete cds. ).
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein.
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/71 (59%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protein
protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting
protein 15 protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing protein
6 protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/71 (57%), Positives = 46/71 (64%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLRLE
Sbjct: 61 KTTKKIVLRLE 71
>AC006530-6|AAD30184.1| 391|Homo sapiens hypothetical protein
protein.
Length = 391
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 335 LTFVDIVPNELKNGERT--KTAQDVLQKM*MPQSTQGITVQKVQGKARCPG 189
L FV+ NEL+ G T K+ ++LQ Q T +TVQKV C G
Sbjct: 252 LCFVEREANELRRGRSTVTKSIVELLQTTGGIQGTLPLTVQKVLASQACHG 302
>M99564-1|AAA36477.1| 838|Homo sapiens P protein protein.
Length = 838
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 19 ASKVALQSPSMATCESHLAIGTPQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNV 183
A + PS E H+ + QD A S W P WT + NP +H+V
Sbjct: 233 AGALVASGPSRPGREEHIVVELTQDDALGSRWRRPQQVTHNWTVYLNPRRSEHSV 287
>BC113477-1|AAI13478.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>BC113475-1|AAI13476.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL512665-2|CAI16955.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL512665-1|CAI16956.1| 655|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL450997-2|CAI19097.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL450997-1|CAI19096.1| 655|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL049557-3|CAB55687.2| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL049557-2|CAI22711.1| 655|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AF205857-1|AAF20925.1| 655|Homo sapiens potassium ionic channel
Kv4.3 long isoform protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AF205856-1|AAF20924.1| 636|Homo sapiens potassium ionic channel
Kv4.3 short isoform protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AF187964-1|AAF01045.1| 636|Homo sapiens voltage gated potassium
channel Kv4.3 short splice variant protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AF187963-1|AAF01044.1| 655|Homo sapiens voltage gated potassium
channel Kv4.3 long splice variant protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AF166011-2|AAF68178.1| 636|Homo sapiens voltage-gated potassium
channel Kv4.3 short variant protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AF166011-1|AAF68177.1| 655|Homo sapiens voltage-gated potassium
channel Kv4.3 long variant protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + ++Y+LR F + + F+R
Sbjct: 235 M--IFTVEYLLRLFAAPSRYRFIR 256
>AL831918-1|CAD38579.1| 810|Homo sapiens hypothetical protein
protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 136 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 243
W+W D+ + D N+F F W C+ IP L
Sbjct: 538 WIWHDNMQ-FLQDKNIFEHTYFGFMWQLCSCIPSTL 572
>AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific
proteinase 34 protein.
Length = 3395
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 136 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 243
W+W D+ + D N+F F W C+ IP L
Sbjct: 2109 WIWHDNMQ-FLQDKNIFEHTYFGFMWQLCSCIPSTL 2143
>AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.
Length = 3412
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 136 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 243
W+W D+ + D N+F F W C+ IP L
Sbjct: 2126 WIWHDNMQ-FLQDKNIFEHTYFGFMWQLCSCIPSTL 2160
>AF120491-1|AAD38898.1| 655|Homo sapiens Sha1-related potassium
channel Kv4.3 protein.
Length = 655
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + +Y+LR F + + F+R
Sbjct: 235 M--IFTGEYLLRLFAAPSRYRFIR 256
>AF048713-1|AAC05122.1| 655|Homo sapiens Kv4.3 potassium channel
long splice variant protein.
Length = 655
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + +Y+LR F + + F+R
Sbjct: 235 M--IFTGEYLLRLFAAPSRYRFIR 256
>AF048712-1|AAC05121.1| 636|Homo sapiens Kv4.3 potassium channel
short splice variant protein.
Length = 636
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLKMGL---D*PP*PC-CLRS*RLLPWAACLSLDFLYCDTLCT 242
N HTS + +F V FF+ + + PC + + LP S+ F DT C
Sbjct: 175 NPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSVAFFCLDTACV 234
Query: 243 LWHLHFLQYVLRCFGTFTIFEFVR 314
+ + +Y+LR F + + F+R
Sbjct: 235 M--IFTGEYLLRLFAAPSRYRFIR 256
>BC107880-1|AAI07881.1| 742|Homo sapiens ZMYM6 protein protein.
Length = 742
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 250 IYIFCSTSCAVLVRSPFLSSFGTISTNV 333
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>BC033903-1|AAH33903.1| 975|Homo sapiens ZMYM6 protein protein.
Length = 975
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 250 IYIFCSTSCAVLVRSPFLSSFGTISTNV 333
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>AL607089-1|CAI12897.1| 1325|Homo sapiens zinc finger, MYM-type 6
protein.
Length = 1325
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 250 IYIFCSTSCAVLVRSPFLSSFGTISTNV 333
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>AF055470-1|AAD15797.1| 723|Homo sapiens ZNF258 protein.
Length = 723
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 250 IYIFCSTSCAVLVRSPFLSSFGTISTNV 333
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,478,358
Number of Sequences: 237096
Number of extensions: 1019499
Number of successful extensions: 2455
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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