Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18e01
(342 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT029953-1|ABM92827.1| 104|Drosophila melanogaster IP17351p pro... 89 2e-18
AE014134-1388|AAF52596.2| 104|Drosophila melanogaster CG7424-PA... 89 2e-18
BT024261-1|ABC86323.1| 121|Drosophila melanogaster IP15820p pro... 72 2e-13
M32660-1|AAA28895.1| 490|Drosophila melanogaster protein ( D.me... 27 4.8
BT024203-1|ABC86265.1| 490|Drosophila melanogaster RE45089p pro... 27 4.8
AE014296-3172|AAF49144.2| 490|Drosophila melanogaster CG9262-PA... 27 4.8
BT011125-1|AAR82792.1| 1030|Drosophila melanogaster LD07466p pro... 27 6.4
AY051898-1|AAK93322.1| 1232|Drosophila melanogaster LD38671p pro... 27 6.4
AE014297-4146|AAF56723.1| 1284|Drosophila melanogaster CG5634-PA... 27 6.4
>BT029953-1|ABM92827.1| 104|Drosophila melanogaster IP17351p
protein.
Length = 104
Score = 88.6 bits (210), Expect = 2e-18
Identities = 45/71 (63%), Positives = 50/71 (70%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPKQRRT+ V+QYKKSKER AQGRRRYDRKQQG+GGQ+KPIF
Sbjct: 1 MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLR+E
Sbjct: 61 KTTKKIVLRME 71
>AE014134-1388|AAF52596.2| 104|Drosophila melanogaster CG7424-PA
protein.
Length = 104
Score = 88.6 bits (210), Expect = 2e-18
Identities = 45/71 (63%), Positives = 50/71 (70%)
Frame = -3
Query: 298 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 119
MVNVPKQRRT+ V+QYKKSKER AQGRRRYDRKQQG+GGQ+KPIF
Sbjct: 1 MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKA 60
Query: 118 XXXXKIVLRLE 86
KIVLR+E
Sbjct: 61 KTTKKIVLRME 71
>BT024261-1|ABC86323.1| 121|Drosophila melanogaster IP15820p
protein.
Length = 121
Score = 71.7 bits (168), Expect = 2e-13
Identities = 34/48 (70%), Positives = 38/48 (79%)
Frame = -3
Query: 229 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXKIVLRLE 86
+QYKKSKER AQGRRRYDRKQQG+GGQ+KPIF KIVLR+E
Sbjct: 41 TQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAKTTKKIVLRME 88
>M32660-1|AAA28895.1| 490|Drosophila melanogaster protein (
D.melanogaster Sha12protein mRNA, complete cds. ).
Length = 490
Score = 27.5 bits (58), Expect = 4.8
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLK---MGLD*PP*PCCLRS*R--LLPWAACLSLDFLYCDTLC 239
N HTS + +F V FF+ M PC R R LP + F DT C
Sbjct: 177 NPHTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTAC 236
Query: 240 TLWHLHFLQYVLRCFGTFTIFEFVR 314
+ + +Y+LR F +FVR
Sbjct: 237 VM--IFTAEYLLRLFAAPDRCKFVR 259
>BT024203-1|ABC86265.1| 490|Drosophila melanogaster RE45089p
protein.
Length = 490
Score = 27.5 bits (58), Expect = 4.8
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLK---MGLD*PP*PCCLRS*R--LLPWAACLSLDFLYCDTLC 239
N HTS + +F V FF+ M PC R R LP + F DT C
Sbjct: 177 NPHTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTAC 236
Query: 240 TLWHLHFLQYVLRCFGTFTIFEFVR 314
+ + +Y+LR F +FVR
Sbjct: 237 VM--IFTAEYLLRLFAAPDRCKFVR 259
>AE014296-3172|AAF49144.2| 490|Drosophila melanogaster CG9262-PA
protein.
Length = 490
Score = 27.5 bits (58), Expect = 4.8
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 NRHTSRRSTIFLVVFAFFLK---MGLD*PP*PCCLRS*R--LLPWAACLSLDFLYCDTLC 239
N HTS + +F V FF+ M PC R R LP + F DT C
Sbjct: 177 NPHTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTAC 236
Query: 240 TLWHLHFLQYVLRCFGTFTIFEFVR 314
+ + +Y+LR F +FVR
Sbjct: 237 VM--IFTAEYLLRLFAAPDRCKFVR 259
>BT011125-1|AAR82792.1| 1030|Drosophila melanogaster LD07466p
protein.
Length = 1030
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 195 AACLSLDFLYCDTLCTLWHLH 257
A C S D L D C WH H
Sbjct: 272 AKCYSQDLLVYDVYCDSWHYH 292
>AY051898-1|AAK93322.1| 1232|Drosophila melanogaster LD38671p
protein.
Length = 1232
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 195 AACLSLDFLYCDTLCTLWHLH 257
A C S D L D C WH H
Sbjct: 474 AKCYSQDLLVYDVYCDSWHYH 494
>AE014297-4146|AAF56723.1| 1284|Drosophila melanogaster CG5634-PA
protein.
Length = 1284
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 195 AACLSLDFLYCDTLCTLWHLH 257
A C S D L D C WH H
Sbjct: 526 AKCYSQDLLVYDVYCDSWHYH 546
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,318
Number of Sequences: 53049
Number of extensions: 306460
Number of successful extensions: 867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 798368334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -