Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d24
         (428 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K441 Cluster: Putative uncharacterized protein; n=2; ...    36   0.47 
UniRef50_A0E6V7 Cluster: Chromosome undetermined scaffold_80, wh...    33   2.5  
UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa sub...    32   4.4  
UniRef50_Q8IK84 Cluster: Putative uncharacterized protein; n=2; ...    31   7.7  

>UniRef50_A5K441 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 5540

 Score = 35.5 bits (78), Expect = 0.47
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 188  GNHLIPDCLTDREHVYSSKQ*NIYIMTMLYYKNNLWLFYAVKKVTINKKSNEYKLQNVHQ 9
            G+ LI DCL    + YS K  +       YYK +   F  +K   IN+KS  Y  ++ +Q
Sbjct: 3140 GSKLITDCLCSAGYEYSEKTASCEQCKPGYYKKSTGNFICIKGCPINRKSTIYGAKSYNQ 3199


>UniRef50_A0E6V7 Cluster: Chromosome undetermined scaffold_80, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_80,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 164

 Score = 33.1 bits (72), Expect = 2.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 155 REHVYSSKQ*NIYIMTMLYYK---NNLWLFYAVKKVTINKKSNEYKLQN 18
           ++  YS+    I+I+   Y K   N + +FY  KK   NKK+N  KLQN
Sbjct: 104 KDQDYSTFNEYIHILKQFYSKEKYNYICIFYIYKKRIKNKKTNSIKLQN 152


>UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa
           subunit; n=1; Bigelowiella natans|Rep: DNA-directed RNA
           polymerase I 40kDa subunit - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 293

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 122 IYIMTMLYYKNNLWLFYAVKKVTINKKSNEY 30
           I I  ++YYK NL  F  +KK  INKK +++
Sbjct: 218 ILIKNLIYYKQNLENFLYLKKTNINKKFSKF 248


>UniRef50_Q8IK84 Cluster: Putative uncharacterized protein; n=2;
            Eukaryota|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 5890

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 200  SMGSGNHLIPDCLTDREHVYSSKQ*NIYIMTMLYYKNNLWLFYAVKKVTINKKSNEY 30
            ++ +G+ L  DCL    + YS K          YYK ++  F  +K   IN+KS  Y
Sbjct: 3303 TLKNGSKLKTDCLCSPGYEYSDKSSKCEKCKPGYYKKSVGNFICIKGCPINEKSITY 3359


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,159,902
Number of Sequences: 1657284
Number of extensions: 7781692
Number of successful extensions: 14912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14909
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)