Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d24
         (428 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   0.49 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   1.5  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
          cytoskeletal structural protein protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 13 CTFCSLYSLLFLFIV 57
          C FC L++L FLF+V
Sbjct: 7  CPFCLLFNLYFLFVV 21


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +1

Query: 172 GIKWLPEPIDTYNVKAPSTLRYKF*CLSIVTTAAPSFKSKRMTASRQKRVGYLPVRTH-- 345
           G++ L EP+D ++    S L YK    ++V     S   K  T      V +L  R +  
Sbjct: 240 GLERLNEPVDKWDTPLTSLLFYKLDSKTLVAWEQYSVDFK--TDEFTNLVEFLEQRVNIL 297

Query: 346 KTSTSNNTNCY-ASLIFIT 399
           K+S  N  N Y A+ I +T
Sbjct: 298 KSSAQNICNQYSANSIMVT 316


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,568
Number of Sequences: 2352
Number of extensions: 8180
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 35292513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)