Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d24
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   5.7  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   5.7  
Z93396-4|CAB07713.1|  230|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    27   7.5  

>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +1

Query: 247 CLSIVTTAAPSFKSKRMTASRQKRVGYLPVRTHK----TSTSNNTNCYASLIFITLCYTF 414
           C S VTTA    K+K   + ++ R+ +L V T +    T+TS++++   SL F+  C  F
Sbjct: 207 CTSTVTTAPKLTKAKSCDSIKRTRLYFLVVYTCRFFSPTATSHSSH---SLSFLGTCRVF 263


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 261  YNGCPILQIETHDCFT 308
            YNGC IL IE HD  T
Sbjct: 1384 YNGCHILPIEQHDVCT 1399


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 261  YNGCPILQIETHDCFT 308
            YNGC IL IE HD  T
Sbjct: 1384 YNGCHILPIEQHDVCT 1399


>Z93396-4|CAB07713.1|  230|Caenorhabditis elegans Hypothetical
           protein ZC15.6 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 181 WLPEPIDTYNVKAPST--LRYKF*CLSIVTTAAPSFKSKRMTA 303
           W+P P D    +   T  + YKF C++ VT     F   +M A
Sbjct: 187 WVPGPYDLEGFRTGFTHGILYKFSCIAPVTPGTRMFACGKMAA 229


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 241 F*CLSIVTTAAPSFKSKRMTASRQKRVGYLPVRTHKTSTSNNTNCYASL 387
           F C++I    + SF+++    S  + VG   V+  KT  S N   +A L
Sbjct: 27  FGCITIAKIYSASFRNEGKGLSLSETVGSGDVKKGKTKASLNAEFFAKL 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,670,233
Number of Sequences: 27780
Number of extensions: 191292
Number of successful extensions: 382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)