Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d23
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 224 9e-60
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 2e-08
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 8.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 8.7
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 224 bits (548), Expect = 9e-60
Identities = 109/215 (50%), Positives = 141/215 (65%), Gaps = 1/215 (0%)
Frame = -1
Query: 710 KKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFI 531
K NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF
Sbjct: 20 KTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQ 79
Query: 530 QTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTV 354
+TLDK TA +FK+L KYRPET + P ++ G N V
Sbjct: 80 KTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHV 139
Query: 353 TKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLA 174
L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA
Sbjct: 140 VALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLA 199
Query: 173 LTNVESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
+T V D+ + +V A+ NF+ +Y+E R+ G
Sbjct: 200 VTEVREEDKNELASIVSAVDANFSAKYDESRRKWG 234
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 73 WGGGVLGNKSNARIAKLEKAKA 8
WGGG++G K+ A +AK KA A
Sbjct: 233 WGGGIMGGKTQALLAKRAKAAA 254
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/102 (32%), Positives = 48/102 (47%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHL 72
K T + V G + SKV E + E YEE+ K +
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIKEV 149
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 663 YWSGHSANS*LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 508
Y+ + N + Q+ A YP+ +S SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 551 GALSDDAEVQPSDAGCGYTWAILQIWTSHELAECP-----DQXQSSLASSRKEDSQFSWA 715
GA D EV+ G I++ W S+ E DQ Q + S ++ + +W
Sbjct: 912 GAQGDTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQQQMMDQFQKVIGSFAQQINSNNWL 971
Query: 716 QTFLTTN 736
Q+ ++TN
Sbjct: 972 QSRVSTN 978
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 356 LCLCRIGWC 382
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +3
Query: 483 LQNLEKALSCSLVQCLDKLVDRRGHFQTTLKYS----LLTLDADILGPS-YKSGQVTSWL 647
L+N ++ L +L + L +V++ H TTL Y+ LL + + + S K T+++
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDKKEKNETAFM 1749
Query: 648 NALTNXKVLWPLLEKR---IHNFL 710
+ + + P+L+ +H+FL
Sbjct: 1750 SMVLVLTLAAPILDSEQLVVHDFL 1773
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 252
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,815
Number of Sequences: 5004
Number of extensions: 48745
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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