Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d23
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 250 9e-67
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 223 1e-58
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 208 4e-54
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 53 2e-07
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 53 3e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 52 6e-07
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 50 3e-06
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.079
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.079
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 28 6.9
08_02_0985 + 23299996-23300208,23300355-23300520,23300790-233010... 28 9.1
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 9.1
01_01_1106 + 8750597-8754031 28 9.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 250 bits (612), Expect = 9e-67
Identities = 118/214 (55%), Positives = 153/214 (71%)
Frame = -1
Query: 710 KKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFI 531
+K+ NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF
Sbjct: 18 EKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFT 77
Query: 530 QTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVT 351
+TLDK A LFK+L KYRPE +P ++ G N VT
Sbjct: 78 RTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAK-KPIVVKYGLNHVT 136
Query: 350 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 171
L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L L
Sbjct: 137 YLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCL 196
Query: 170 TNVESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
T V++ D+ FSK++EAIK NFN++++E+RK G
Sbjct: 197 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWG 230
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 73 WGGGVLGNKSNARIAKLEKAKARE 2
WGGGV+G+KS A+ EK A+E
Sbjct: 229 WGGGVMGSKSQAKTKAREKLLAKE 252
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 223 bits (545), Expect = 1e-58
Identities = 110/211 (52%), Positives = 148/211 (70%)
Frame = -1
Query: 701 VNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFIQTL 522
VNPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQF +TL
Sbjct: 22 VNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTL 81
Query: 521 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLV 342
DK ++L++ + E +P ++ G + VT L+
Sbjct: 82 DKNLGCQKERLLKRAQAEAEGKTVEAK-----------------KPIVVKYGLDHVTYLI 124
Query: 341 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 162
E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V
Sbjct: 125 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTV 184
Query: 161 ESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
++ D+ FSK++EAIK+NFN++++E+RK G
Sbjct: 185 KNEDKLEFSKILEAIKSNFNDKFDEVRKKWG 215
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 73 WGGGVLGNKSNARIAKLEKAKARE 2
WGGG++G+KS A+ EK A+E
Sbjct: 214 WGGGIMGSKSQAKTKAREKLLAKE 237
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 208 bits (508), Expect = 4e-54
Identities = 107/214 (50%), Positives = 140/214 (65%)
Frame = -1
Query: 710 KKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFI 531
+K+ NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQF
Sbjct: 2 EKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFT 61
Query: 530 QTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVT 351
+TLDK A LFK+L KYRPE K+P ++ G N VT
Sbjct: 62 RTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVT 120
Query: 350 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 171
L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +VH+KT + L L
Sbjct: 121 YLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCL 166
Query: 170 TNVESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
T V++ D+ FSK++EAIK NFN++++E+RK G
Sbjct: 167 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWG 200
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 73 WGGGVLGNKSNARIAKLEKAKARE 2
WGGGV+G+KS A+ EK A+E
Sbjct: 199 WGGGVMGSKSQAKTKAREKLLAKE 222
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C +N S R + + AI+
Sbjct: 93 VTRPVIACSVTSNEASNLRDPINNLKVAIE 122
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 204
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 84
R TC L LT G+ V E +KT++++ E+
Sbjct: 105 TKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVMSEV 142
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C +N S + + +AI+
Sbjct: 95 VTRPVIACSVTSNEGSQLKTPIQNLKDAIE 124
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 84
K TC L + +V E +K++++ E+
Sbjct: 105 TKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAEV 142
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 718 LSPRKL*IL---FSRRGQRTLXLVRAFSQLVTCPD 623
L PR L +L +RRG R L +VRA S V PD
Sbjct: 16 LGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
>08_02_0985 +
23299996-23300208,23300355-23300520,23300790-23301043,
23301128-23301340,23301414-23301506,23301609-23301710,
23302852-23303229
Length = 472
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = -1
Query: 740 PHWWSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQR 588
PHW K + + +N K I Q QPTRD V W K IR R
Sbjct: 191 PHW-KKYKDDEGYINNFMGKLSVRLAINQKHQPTRDACADV-WQKGIRQTR 239
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 600 PHPASEGCTSASSESAPSDQP 538
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = -3
Query: 282 SLPASVMP*NGCTILHCQG----QIPPRGTCTSQDMHMLSSNKCGV 157
+LP+S+ +L+ +G +I P C+ Q++H L+ ++CGV
Sbjct: 532 TLPSSIGTLQSLHLLNLKGCGNLEILPDTICSLQNLHFLNLSRCGV 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,018,399
Number of Sequences: 37544
Number of extensions: 371011
Number of successful extensions: 1138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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