Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d23
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   296   5e-82
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   2.5  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.3  
AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease pr...    24   4.3  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    24   5.7  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           24   5.7  
AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykin...    23   7.6  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  296 bits (726), Expect = 5e-82
 Identities = 136/226 (60%), Positives = 170/226 (75%)
 Frame = -1

Query: 746 PPPHWWSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQR 567
           P P    K+ E KK+VNPLFEKR KN+ IGQ +QP RDLSRFV+WPKYIRIQR +A+LQ+
Sbjct: 19  PAPLAKPKKVEVKKVVNPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQK 78

Query: 566 RLKVPPPINQFIQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKR 387
           RLK+PPPINQF QTLDK TA+ + K  +KYRPE                         KR
Sbjct: 79  RLKIPPPINQFTQTLDKPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKR 138

Query: 386 PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGA 207
            N +R G N+V K+VE+KKAQLV+IAHDVDPIELV++LPALCRKMGVPYCI+KGK+RLG 
Sbjct: 139 ANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGT 198

Query: 206 LVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
           LV+RKTCTC+ALT  E+ D+ + +K+VE IKTNFN+R++++R+H G
Sbjct: 199 LVYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWG 244



 Score = 43.2 bits (97), Expect = 9e-06
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 73  WGGGVLGNKSNARIAKLEKAKARE 2
           WGGG+LG KS AR+AKLEKAK RE
Sbjct: 243 WGGGLLGPKSMARLAKLEKAKKRE 266


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 381  HHPIRHKHSHQAGREEEGAACGHRS*C*SY*AGSLPASVMP 259
            HH + H H H  G   EG   G  +   S  AG L A V P
Sbjct: 1315 HHHLHHGHHHHHG--GEGVPMGPANAAPSSPAGVLVAKVPP 1353


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 459  CFSLRPVFLQNLEKALSCSLVQCLDKLVDRRGH 557
            CF  + V ++ +    S + +  L + V RRGH
Sbjct: 1454 CFVTKAVHIELVSNLTSSAFLAALRRFVARRGH 1486


>AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease
           protein.
          Length = 435

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 539 G*SEGALSDDAEVQPSDAGCG 601
           G  +G  + DA V+P + GCG
Sbjct: 174 GLGDGPTARDATVRPEERGCG 194


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 420 LSFSSFPQPLFPGCFSLRPVFLQNLEKAL 506
           + F  F QP+F  C+ L  + L+N+   +
Sbjct: 506 IKFGLFFQPIFSVCWFLEVIALENVHSCV 534


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 731  WSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVR 615
            W+ RFE K  ++ + ++R K   I  G  P RDL   +R
Sbjct: 1145 WT-RFEFKGAIHEVLKRRRKLIIILYGDLPQRDLDADMR 1182


>AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykinin
           receptor protein.
          Length = 450

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 602 YTWAI--LQIWTSHELAECPDQXQSSLASSRK 691
           YT+A   L++W S  + EC  +   ++ S R+
Sbjct: 263 YTYARVGLELWGSKSIGECTQRQLDNIKSKRR 294


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,311
Number of Sequences: 2352
Number of extensions: 13986
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)