Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d23
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 254 5e-68
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 242 2e-64
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 124 7e-29
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 103 1e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 8e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 9e-06
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 33 0.21
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.1
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 254 bits (622), Expect = 5e-68
Identities = 118/225 (52%), Positives = 158/225 (70%)
Frame = -1
Query: 743 PPHWWSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 564
P H ++ K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 15 PAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 74
Query: 563 LKVPPPINQFIQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRP 384
LKVPP INQF LD +A+ FK+L+KYRPE+ KRP
Sbjct: 75 LKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRP 134
Query: 383 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 204
NT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
V RKT +AL +V D+++ +K+VE + NF+ER+EE+RKH G
Sbjct: 195 VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWG 239
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2
Query: 73 WGGGVLGNKSNARIAKLEKAKARE 2
WGGGV+ KS+A+ K+E+A+AR+
Sbjct: 238 WGGGVMSAKSDAKKLKIERARARD 261
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 242 bits (593), Expect = 2e-64
Identities = 117/225 (52%), Positives = 157/225 (69%)
Frame = -1
Query: 743 PPHWWSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 564
P H ++ K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 15 PAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 74
Query: 563 LKVPPPINQFIQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRP 384
LKVPP INQF LD +A+ FK+L+KYRPE+ RP
Sbjct: 75 LKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------------RP 114
Query: 383 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 204
NT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHLG 69
V RKT +AL +V D+++ +K+VE + NF+ER+EE+RKH G
Sbjct: 175 VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWG 219
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2
Query: 73 WGGGVLGNKSNARIAKLEKAKARE 2
WGGGV+ KS+A+ K+E+A+AR+
Sbjct: 218 WGGGVMSAKSDAKKLKIERARARD 241
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 124 bits (299), Expect = 7e-29
Identities = 55/93 (59%), Positives = 72/93 (77%)
Frame = -1
Query: 743 PPHWWSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 564
P H ++ K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 118 PAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 177
Query: 563 LKVPPPINQFIQTLDKTTAKGLFKILEKYRPET 465
LKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 178 LKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 103 bits (248), Expect = 1e-22
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = -1
Query: 743 PPHWWSKRFEPKKIVNPLFEKRPKNFXIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 564
P H ++ K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+R
Sbjct: 118 PAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 177
Query: 563 LKVPPPINQFIQTLD 519
LKVPP INQF LD
Sbjct: 178 LKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -1
Query: 380 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 201
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 200 HRKTCTCLALTNVESGDRASFSKVVEAIK 114
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +3
Query: 423 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLDKLV 542
SF SFP QP+ C +++P F+ N+EKA + C ++Q +++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -2
Query: 550 LRSTNLSRHWTRLQLRA 500
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 600 PHPASEGCTSASSESAPSDQPIYPDTG 520
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 600 PHPASEGCTSASSESAPSDQPIYPDTG 520
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,357
Number of Sequences: 27780
Number of extensions: 291437
Number of successful extensions: 846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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