Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d21
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 54 1e-07
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 50 3e-06
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 40 0.003
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 33 0.18
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 33 0.24
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 33 0.24
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 31 0.72
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 31 0.72
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 31 1.3
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 30 1.7
01_01_0990 + 7847066-7847478,7847713-7848679 30 2.2
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 29 2.9
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 2.9
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 29 3.8
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 29 3.8
07_03_0808 - 21668100-21669092 29 3.8
02_05_0876 - 32399066-32399920 29 3.8
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 5.1
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 5.1
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 28 6.7
02_05_0200 - 26681968-26682181,26683269-26683383,26683495-266835... 28 6.7
02_02_0637 - 12491706-12492575,12492580-12492657 28 6.7
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 28 8.8
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 28 8.8
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Frame = -3
Query: 657 LKIHERVHSGEKPFSCTFCDYKSGQKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVVH 478
+++ H + + C FC +K + H++ H KE+ + + Y+ VVH
Sbjct: 1 MRVEATQHRDIRRYKCEFCTVVRSKKCLIRAHMVAHHKEELDKSEI--YK--SNGEKVVH 56
Query: 477 ERTHTGFKPFACSYCAYRTVQKP-NLVKHMYLHTNQKPFSC--DQCNYRCVQKTNLTKHK 307
E HT C C + QKP +L +HM H++++ F C + C + ++K +L +H
Sbjct: 57 EGDHT------CQECG-ASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHM 109
Query: 306 LRH 298
L+H
Sbjct: 110 LKH 112
Score = 47.2 bits (107), Expect = 1e-05
Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 31/221 (14%)
Frame = -3
Query: 726 GEKD-RAGKFGCTQCSYRCQSPAILKIHERVHSGEKPFSCTF--CDYKSGQKNNVAKHIL 556
GEK G C +C Q PA LK H + HS E+ F C C + +K+++ +H+L
Sbjct: 51 GEKVVHEGDHTCQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHML 110
Query: 555 VHMKEKPFRCQY--CNYRCAQKNNLVVH-------ERTHTGFKPFACSYCAYRTVQK--P 409
H + K F C C + + K N+ H E + F C V K
Sbjct: 111 KH-QGKLFTCSMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQFVCKEEGCNKVFKYAS 169
Query: 408 NLVKHMYLHTN---QKPFSCDQ-C-----NYRCVQKTNLTKHKLRHLNEKSGEKLDVRNV 256
+ KH H + C+ C N C++ N H+ + GEK +N+
Sbjct: 170 KMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQC-DICGEKHLKKNI 228
Query: 255 KPYR------PRQKSVKCHM--CAYRCVQKSSMEKHMKFEH 157
K + P + +KC C KS++ KH+K H
Sbjct: 229 KRHLRAHEEVPSTERIKCSFEGCECSFSNKSNLTKHIKASH 269
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 49.6 bits (113), Expect = 3e-06
Identities = 54/218 (24%), Positives = 84/218 (38%), Gaps = 9/218 (4%)
Frame = -3
Query: 657 LKIHERVHSGEKPFSCTF--CDYKSGQKNNVAKHILVHMKEKPFRCQY--CNYRCA--QK 496
L+ H VH GE+ + C + CD K + + +H L+H EK F C + C A
Sbjct: 60 LRKHAHVH-GERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEGCGKVLAFSLD 118
Query: 495 NNLVVHERTHTGFKPFACSY--CAYRTVQKPNLVKHMYLHTNQKPFSCDQCNYRCVQKTN 322
NL H +TH+ C Y CA R Q+ L H + + ++
Sbjct: 119 FNLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAH--IKQQHEKGGLQNPGGSATNRSG 176
Query: 321 LTKHKLRHLNEKSGEKLDVRNVKPYRPRQKSVKCHMCAYRCVQKSSMEKHMKFEHGASFE 142
L H + K P R CA + + + H+K EH +
Sbjct: 177 LADHS----HNSHTPKPSAAPPTPSADRPYVCPYDGCAKAYIHEYKLNLHLKKEHPNHY- 231
Query: 141 QEGGSNDAIQNLSVKKDDYYADKSMEA-LPAPAVPS*R 31
Q+ G+ A +S ++ + S+ A +P P VP R
Sbjct: 232 QDAGAQAASSKMSKRR----SKPSLTAKMPLPKVPKRR 265
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Frame = -3
Query: 687 CSYRCQSPAILKIHERVHSGEKPFSCTF--CD--YKSGQKNNVAKHILVHMKEKPFRCQY 520
C + + LK H +H+GEK F C C N+ H+ H + C+Y
Sbjct: 79 CDKKFLDSSKLKRHFLIHTGEKNFVCPHEGCGKVLAFSLDFNLKAHMKTHSVDNYHVCKY 138
Query: 519 --CNYRCAQKNNLVVH 478
C R Q++ L H
Sbjct: 139 PECARRFTQESKLRAH 154
>03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 696 CTQ--CSYRCQSPAILKIHERVHSGEKPFSCTF--CDYKSGQKNNVAKHILVHMKEKPFR 529
CT C R S LK H+ VH E+PF C + C +HI VH E+P++
Sbjct: 819 CTDESCGKRFSSHKYLKRHQCVHRDERPFKCPWDGCPMTFKWLWAQTEHIRVHTGERPYK 878
Query: 528 C 526
C
Sbjct: 879 C 879
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -3
Query: 687 CSYRCQSPAILKIHERVHSGEKPFSCTFCDYKSGQKNNVAKHILVHMKEKPFRCQY--CN 514
C ++ A L+ H+R ++ F +K + +H VH E+PF+C + C
Sbjct: 801 CDMTFETKAELRAHQRNICTDESCGKRFSSHKY-----LKRHQCVHRDERPFKCPWDGCP 855
Query: 513 YRCAQKNNLVVHERTHTGFKPFACS 439
H R HTG +P+ CS
Sbjct: 856 MTFKWLWAQTEHIRVHTGERPYKCS 880
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = -3
Query: 519 CNYRCAQKNNLVVHERTHTGFKPFACSY--CAYRTVQKPNLVKHMYLHTNQKPFSCD--Q 352
C R + L H+ H +PF C + C +H+ +HT ++P+ C
Sbjct: 824 CGKRFSSHKYLKRHQCVHRDERPFKCPWDGCPMTFKWLWAQTEHIRVHTGERPYKCSAPD 883
Query: 351 C--NYRCVQKTNLTKHKLRH 298
C ++R V + + K H
Sbjct: 884 CGQSFRYVSDYSRHRKKFNH 903
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 648 HERVHSGEKPFSCTFCDYKSGQKNNVAK--HILVHMKEKPFRCQ 523
H +VH E+P CT+ K K A+ H+ VH +P+ CQ
Sbjct: 1273 HRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQ 1316
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = -3
Query: 489 LVVHERTHTGFKPFACSYCAYRTVQK-P-NLVKHMYLHTNQKPFSCDQ--C--NYRCVQK 328
L+ H + H +P C++ + K P +HM +HT +P+ C + C +R V
Sbjct: 1270 LLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCGQTFRFVSD 1329
Query: 327 TNLTKHKLRHLNEK 286
+ K K H ++K
Sbjct: 1330 FSRHKRKTGHSSDK 1343
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 567 KHILVHMKEKPFRCQYCNYRCAQKNNLV--VHERTHTGFKPFAC 442
+H VH+ E+P +C + + A K H R HTG +P+ C
Sbjct: 1272 QHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYEC 1315
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Frame = -3
Query: 687 CSYRCQSPAILKIHERVHSGEKPFSCTF--CDYKSGQKNNVAKHILVHMKEKPFRCQY-- 520
C + + LK H +H+G+K F C C N+ H+ H E C +
Sbjct: 123 CGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPA 182
Query: 519 CNYRCAQKNNLVVHERTH 466
C R + L H + H
Sbjct: 183 CGKRFTSDSKLKSHVKGH 200
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Frame = -3
Query: 534 FRCQY--CNYRCAQKNNLVVHERTHTGFKPFACSY--CAYRTVQKPNLVKHMYLHTNQKP 367
F C Y C L H H + + C C + V L +H +HT QK
Sbjct: 87 FLCSYENCGKTFVDVAALRKHAHVHNE-RQYICQEPGCGKKFVDSSKLKRHHLIHTGQKD 145
Query: 366 FSCDQ--CNYRCVQKTNLTKHKLRHLNE 289
F C C NL H H E
Sbjct: 146 FICPHPGCGKAFSLDFNLRSHLKTHALE 173
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 696 CT--QCSYRCQSPAILKIHERVHSGEKPFSCTF--CDYKSGQKNNVAKHILVHMKEKPFR 529
CT C +S L+ H+ +H+ + P+ C + C + +H VH ++P++
Sbjct: 565 CTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYK 624
Query: 528 C 526
C
Sbjct: 625 C 625
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -3
Query: 588 GQKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVVHERTHTGFKPFACSYCAYRTVQKP 409
G + KH EK + CQ C R A + +L H +T G + + C C ++
Sbjct: 119 GDLTGIKKHFCRKHGEKRWTCQRCGKRYAVQADLKAHTKT-CGTREYRCD-CGTLFTRRD 176
Query: 408 NLVKH 394
+ V H
Sbjct: 177 SFVTH 181
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -3
Query: 603 CDYKSGQKNNVAKHILVHMKEKPFRCQY--CNYRCAQKNNLVVHERTHTGFKPFAC 442
C K + +H VH ++P C + CN H R HTG +P+ C
Sbjct: 1116 CGKKFFSHKYLLQHRKVHTDDRPLTCPWKGCNMAFKWPWARTEHLRVHTGDRPYVC 1171
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = -3
Query: 519 CNYRCAQKNNLVVHERTHTGFKPFACSYCAYRTVQK-P-NLVKHMYLHTNQKPFSCDQCN 346
C + L+ H + HT +P C + K P +H+ +HT +P+ C +
Sbjct: 1116 CGKKFFSHKYLLQHRKVHTDDRPLTCPWKGCNMAFKWPWARTEHLRVHTGDRPYVCHEPG 1175
Query: 345 YRCVQKTNLTKHKLRHLNEKSGEKL 271
C Q RH K+G +
Sbjct: 1176 --CAQTFRFVSDFSRH-KRKTGHSV 1197
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -3
Query: 282 GEKLDVRNVKPYRPRQKSVKCHMCAYRCVQKSSMEKHMKFEHGASFEQEG--GSNDA-IQ 112
G ++ V+N+ +PR++ + MC V SSM H + + G+ G S+DA +
Sbjct: 251 GYRIKVKNMGRQQPRKEGPRAGMCGEGKVLVSSMSMHEEKKSGSGVNCHGWLQSDDAFLL 310
Query: 111 NLSVKKDDYYADKSMEA 61
N + K + S +A
Sbjct: 311 NCRISKTSKWVRTSSDA 327
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = -3
Query: 588 GQKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVVHERTHTGFKPFACSYCAYRTVQKP 409
G + KH EK +RC C+ R A +++ H +T G + + C C ++
Sbjct: 106 GDLTGIKKHYCRKHGEKKWRCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRD 163
Query: 408 NLVKH 394
+ + H
Sbjct: 164 SFITH 168
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 29.9 bits (64), Expect = 2.2
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Frame = -3
Query: 705 KFGCTQCSYRCQSPAILKIHERVH---------SGEKPFSCTF-CDYKS----------G 586
+F C C Q L++H R H SG++P + C KS G
Sbjct: 24 RFVCEICGKGFQRDQNLQLHRRGHNLPWKLRQRSGKEPRKRVYVCPEKSCVHHNPSRALG 83
Query: 585 QKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVVHERTHTGFKPFACSYCAYRTVQKPN 406
+ KH EK ++C C+ R A +++ H +T G + + C C ++ +
Sbjct: 84 DLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDS 141
Query: 405 LVKH 394
+ H
Sbjct: 142 FITH 145
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 588 GQKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVVHERTHTGFKPFACSYCAYRTVQKP 409
G + KH EK +RC+ C R A ++ H + + G + + C C +K
Sbjct: 106 GDLTGIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAHVK-NCGTREYRCD-CGILFSRKD 163
Query: 408 NLVKH 394
+L+ H
Sbjct: 164 SLLTH 168
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 627 EKPFSCTFCDYKSGQKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVVH 478
EK F C +CD + + K ++ H K K F+C C+ + + + +H
Sbjct: 9 EKVF-CYYCDREFDDE----KILVQHQKAKHFKCHVCHKKLSTAGGMAIH 53
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -3
Query: 696 CTQCSYRCQSPAILKIHE--RVH-------SGEKPFSCTFCDYKSGQKNNVAKH 562
C C+ +C + L+ HE R H +GEK C CD + NVA+H
Sbjct: 193 CGVCNVKCMTRFNLREHEAGRKHRDKVASNAGEKNVRCQLCDVLLASELNVAQH 246
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 147 FEQEGGSNDAIQNLSVKKDD 88
FE+EGG DAI L+VK+D+
Sbjct: 730 FEEEGGKPDAIMILTVKRDN 749
>07_03_0808 - 21668100-21669092
Length = 330
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -2
Query: 535 FPVPVLQLQVRPEEQPGCPRAHAHRLQTXXXXXXXLPDRPEAEPGQAHVPAHEPEA 368
+P P LQ + R +P R H H+ P R PG A PE+
Sbjct: 127 YPAPRLQPRARRPRRPRRARGHQHQPALRHLPPSTAPRRTPPPPGSASPRPSSPES 182
>02_05_0876 - 32399066-32399920
Length = 284
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 42 APRGPATPPCSCRRSNHPSSRSGSVWRH 125
AP P+ P S +RS+ P R+G RH
Sbjct: 6 APASPSPPRSSKKRSSRPKPRAGDAARH 33
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -3
Query: 654 KIHERVHSGEKPFSCTFCDYKS--GQKNNVAKHILVHMKEKPFRCQYCNYRCAQKNNLVV 481
++ +RV+ +P +C D G + KH EK ++C C+ + A +++
Sbjct: 83 EVRKRVYVCPEP-TCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKA 141
Query: 480 HERTHTGFKPFACSYCAYRTVQKPNLVKH 394
H +T G + + C C ++ + + H
Sbjct: 142 HTKT-CGSREYRCD-CGTLFSRRDSFITH 168
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -3
Query: 312 HKLRHLNEKSGEKLDVRNVKPYRPRQKSVKCHMCAYRCVQKSSMEKHMKFEHGASFEQEG 133
++L +KS E+L+ RN++ RQK H A VQ S + +F +G E E
Sbjct: 617 YELEEKFQKSQEELEQRNLELSELRQKLDSSHSMAGEGVQTSGARGY-QFRNGMDSEPET 675
Query: 132 GSNDA-IQNLSVKKDDYYADK-SMEAL 58
A IQ + DD K ME++
Sbjct: 676 DVLKAKIQLQQQENDDLRCSKVEMESV 702
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -3
Query: 423 TVQKPNLVKHMYL-HTNQ---KPFSCDQCNYRCVQKTN 322
T + PNL KH + NQ PF+CD+C++ C N
Sbjct: 3 TPEFPNLGKHCSVGDCNQIDFLPFTCDRCDHNCCFNKN 40
>02_05_0200 -
26681968-26682181,26683269-26683383,26683495-26683531,
26683619-26683694,26683995-26684050,26684161-26684230,
26684320-26684624
Length = 290
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 123 DAIQNLSVKKDDYYADKSMEALPAPAVPS*RPP 25
DAI++ S+ +D A +PAPA P+ PP
Sbjct: 253 DAIRSGSISAEDVVAKVKNVPVPAPAAPAPAPP 285
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = -1
Query: 524 STATTGAP-----RRTTWLSTSARTPASNRSPARTA 432
+T+TT +P R T WL TS +P S+ SP+ A
Sbjct: 123 ATSTTHSPFCHSWRTTPWLPTSCSSPTSSTSPSARA 158
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -3
Query: 411 PNLVKHMYLHTNQK---PFSCDQCNYRCVQKTNLTKHKLRHLNEKSGEKL-DVRNVKPYR 244
P +V ++ K P +C+ C +C L HK ++K+ E+L D KP +
Sbjct: 260 PKIVSRKHIKKKPKVVQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLERLQDSITPKPVK 319
Query: 243 P 241
P
Sbjct: 320 P 320
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 459 FKPFACSYCAYRTVQKPNLVKHMY 388
F+ F CSYC R +Q+P KH +
Sbjct: 128 FRDFTCSYC--RLIQEPPRTKHCH 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,356,645
Number of Sequences: 37544
Number of extensions: 362628
Number of successful extensions: 1411
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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