Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d20
(675 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89022-1|CAA61431.1| 732|Drosophila melanogaster Tosca protein. 30 2.5
X89021-1|CAA61430.1| 732|Drosophila melanogaster Tosca protein. 30 2.5
AY051794-1|AAK93218.1| 732|Drosophila melanogaster LD31018p pro... 30 2.5
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 30 2.5
AE014134-2957|AAF53687.1| 732|Drosophila melanogaster CG10387-P... 30 2.5
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA... 30 2.5
U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a prote... 29 7.7
U42402-1|AAB02354.1| 906|Drosophila melanogaster stripe b prote... 29 7.7
AY094744-1|AAM11097.1| 790|Drosophila melanogaster GM01751p pro... 29 7.7
AE014297-2438|AAN13756.1| 906|Drosophila melanogaster CG7847-PB... 29 7.7
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA... 29 7.7
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 29 7.7
>X89022-1|CAA61431.1| 732|Drosophila melanogaster Tosca protein.
Length = 732
Score = 30.3 bits (65), Expect = 2.5
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -1
Query: 339 LRPQKRSLGRSLKRLGS----NDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLL 172
L+ ++ + +LK++ S ++ DY+ N M + N + + R+ L
Sbjct: 244 LKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCAL 303
Query: 171 EDY-TREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVKRLXHWVTQQS 25
EDY T E + G+ + D + A +L N + +KRL W +++
Sbjct: 304 EDYETDERYCSNAGTLLEDSEQALHLALGNLN---PFSMKRLDSWTPEKA 350
>X89021-1|CAA61430.1| 732|Drosophila melanogaster Tosca protein.
Length = 732
Score = 30.3 bits (65), Expect = 2.5
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -1
Query: 339 LRPQKRSLGRSLKRLGS----NDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLL 172
L+ ++ + +LK++ S ++ DY+ N M + N + + R+ L
Sbjct: 244 LKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCAL 303
Query: 171 EDY-TREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVKRLXHWVTQQS 25
EDY T E + G+ + D + A +L N + +KRL W +++
Sbjct: 304 EDYETDERYCSNAGTLLEDSEQALHLALGNLN---PFSMKRLDSWTPEKA 350
>AY051794-1|AAK93218.1| 732|Drosophila melanogaster LD31018p
protein.
Length = 732
Score = 30.3 bits (65), Expect = 2.5
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -1
Query: 339 LRPQKRSLGRSLKRLGS----NDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLL 172
L+ ++ + +LK++ S ++ DY+ N M + N + + R+ L
Sbjct: 244 LKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCAL 303
Query: 171 EDY-TREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVKRLXHWVTQQS 25
EDY T E + G+ + D + A +L N + +KRL W +++
Sbjct: 304 EDYETDERYCSNAGTLLEDSEQALHLALGNLN---PFSMKRLDSWTPEKA 350
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 30.3 bits (65), Expect = 2.5
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 449 SCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 628
SC +++ + S RAVS + +I +SD A A S + ++ ++ LA +
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841
Query: 629 SI 634
+
Sbjct: 842 QL 843
>AE014134-2957|AAF53687.1| 732|Drosophila melanogaster CG10387-PA
protein.
Length = 732
Score = 30.3 bits (65), Expect = 2.5
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -1
Query: 339 LRPQKRSLGRSLKRLGS----NDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLL 172
L+ ++ + +LK++ S ++ DY+ N M + N + + R+ L
Sbjct: 244 LKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCAL 303
Query: 171 EDY-TREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVKRLXHWVTQQS 25
EDY T E + G+ + D + A +L N + +KRL W +++
Sbjct: 304 EDYETDERYCSNAGTLLEDSEQALHLALGNLN---PFSMKRLDSWTPEKA 350
>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
protein.
Length = 2733
Score = 30.3 bits (65), Expect = 2.5
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = -1
Query: 618 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 439
V+A++ + + + A E N L+ + + +VA + CE+ + Q+
Sbjct: 2078 VVARMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 2131
Query: 438 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 262
+ I Q++ + S+ + +L VG + RSL +KRLG +I SSDY
Sbjct: 2132 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 2185
Query: 261 V 259
V
Sbjct: 2186 V 2186
>U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a protein
protein.
Length = 1180
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 657 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 710
>U42402-1|AAB02354.1| 906|Drosophila melanogaster stripe b protein
protein.
Length = 906
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436
>AY094744-1|AAM11097.1| 790|Drosophila melanogaster GM01751p
protein.
Length = 790
Score = 28.7 bits (61), Expect = 7.7
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = -1
Query: 618 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 439
V+ ++ + + + A E N L+ + + +VA + CE+ + Q+
Sbjct: 135 VVTRMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 188
Query: 438 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 262
+ I Q++ + S+ + +L VG + RSL +KRLG +I SSDY
Sbjct: 189 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 242
Query: 261 V 259
V
Sbjct: 243 V 243
>AE014297-2438|AAN13756.1| 906|Drosophila melanogaster CG7847-PB,
isoform B protein.
Length = 906
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436
>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
isoform A protein.
Length = 1186
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 235 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 71
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 663 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 716
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 422 CAMSAMRLASCAVSRRAFSQSCRAV 496
C + + ASCAV R + Q CR V
Sbjct: 2148 CNLPCTKTASCAVGERCYQQVCRKV 2172
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,723,609
Number of Sequences: 53049
Number of extensions: 610814
Number of successful extensions: 2577
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2570
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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