Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d17
         (132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    24   2.4  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    23   4.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    23   4.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    23   5.5  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    23   5.5  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    23   7.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    22   9.7  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    22   9.7  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    22   9.7  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   KLIAFSRRVVGLDDIDD 59
           KL  F +RV+G D +DD
Sbjct: 529 KLHVFLQRVIGFDSVDD 545


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 86  VTGGRTGNNIVDIIQANNSPTEGDQ 12
           V G R GNN+     AN +PT  D+
Sbjct: 217 VHGLRLGNNLTRTFWANGNPTPLDR 241


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 82  RAVAPATISSISSKPTTRRLKAINL 8
           + VAP  ++++S+ P+T RL +  L
Sbjct: 485 KRVAPQLLTTLSATPSTSRLASTQL 509


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 67  ATISSISSKPTTRRLK 20
           ATI++ +SKP TRR K
Sbjct: 253 ATITNSNSKPQTRRSK 268


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 102 RHYIKSDGRSHRQQYRRYHPSQQ 34
           R+Y K D    R +YR YH  ++
Sbjct: 313 RNYNKRDRDPDRTKYREYHSERR 335


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 132 EEAHYETDGGRHYIKSDGRSHRQ 64
           EEA Y  + G  YI  D + H+Q
Sbjct: 59  EEAFYLIEKGISYIVDDTKVHKQ 81


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  SVGELLAWMISTILLPVRPPV 84
           SV  L  W++ T  L ++PP+
Sbjct: 212 SVERLTVWVMETARLILKPPI 232


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 22  SVGELLAWMISTILLPVRPPVTL 90
           S+ E+  W++ T+ L +RP  TL
Sbjct: 170 SLREMTVWVMETMRLFLRPQKTL 192


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 9   KLIAFSRRVVGLDDIDDIVAGA 74
           +L++  RRVVG+D   D++  A
Sbjct: 50  ELVSQCRRVVGIDASPDMIKAA 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,621
Number of Sequences: 5004
Number of extensions: 6601
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)