Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d17
         (132 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515522-1|AAM61889.1|  222|Anopheles gambiae glutathione S-tran...    25   0.43 
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           21   5.4  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    21   7.1  

>AF515522-1|AAM61889.1|  222|Anopheles gambiae glutathione
           S-transferase protein.
          Length = 222

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 93  IKSDGRSHRQQYRRYHPSQQL 31
           IKS G  H  +YR  +P +Q+
Sbjct: 45  IKSGGEQHCNEYREVNPMEQV 65


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 62  NIVDIIQANNSPTEG 18
           ++VD+IQA  SP  G
Sbjct: 91  HVVDMIQAQRSPRGG 105


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 76  VAPATISSISSKPTTRRLKAIN 11
           + P T+   S KP +R+ K  N
Sbjct: 128 IVPVTVRPSSPKPNSRKGKISN 149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,513
Number of Sequences: 2352
Number of extensions: 1513
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 23
effective length of database: 509,883
effective search space used: 10197660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)