Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d17
         (132 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    25   5.6  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    25   5.6  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81494-7|CAI79161.1|  387|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z81494-6|CAC42275.1|  451|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z70754-6|CAA94776.1|  242|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical
           protein E04F6.5a protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 95  ISRVTGGRTGNNIVDIIQAN 36
           +SRVTGG TG+N   ++ A+
Sbjct: 467 VSRVTGGNTGSNFGQVVDAS 486


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 115  NRRRPTLYQE*RAVAPATISSISSKPTTRRLKAINLA 5
            +R+ P L    R+  P T +S+   PTT  L+  + A
Sbjct: 1504 SRQSPNLSARRRSYQPTTTTSMIVPPTTHHLRGFSAA 1540


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 24  SRRVVGLDDIDDIVAGATARHS*YNVGRRRFHNVL 128
           ++ ++G++ +DD+    T RH  YNV     H+VL
Sbjct: 156 TKGILGMEAVDDV----TVRHLYYNVKPFELHSVL 186


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 115  NRRRPTLYQE*RAVAPATISSISSKPTTRRLKAINLA 5
            +R+ P L    R+  P T +S+   PTT  L+  + A
Sbjct: 1504 SRQSPNLSARRRSYQPTTTTSMIVPPTTHHLRGFSAA 1540


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
            protein Y47D3B.5b protein.
          Length = 1136

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 132  EEAHYETDGGRHYIKSDGRSHRQQYRRYHPSQ 37
            E +HY   GGR      GR   +Q  RY  SQ
Sbjct: 1021 ERSHYYFGGGRRASLGRGRKKPRQDMRYGESQ 1052


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
            protein Y47D3B.5a protein.
          Length = 1088

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 132  EEAHYETDGGRHYIKSDGRSHRQQYRRYHPSQ 37
            E +HY   GGR      GR   +Q  RY  SQ
Sbjct: 1021 ERSHYYFGGGRRASLGRGRKKPRQDMRYGESQ 1052


>Z81494-7|CAI79161.1|  387|Caenorhabditis elegans Hypothetical
           protein F02E9.10b protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 120 YETDGGRHYIKSDGRSHRQQYRRYHP 43
           Y  +GG  Y +S       QY+ Y+P
Sbjct: 317 YTQEGGHEYYRSHEEYDAAQYQEYNP 342


>Z81494-6|CAC42275.1|  451|Caenorhabditis elegans Hypothetical
           protein F02E9.10a protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 120 YETDGGRHYIKSDGRSHRQQYRRYHP 43
           Y  +GG  Y +S       QY+ Y+P
Sbjct: 381 YTQEGGHEYYRSHEEYDAAQYQEYNP 406


>Z70754-6|CAA94776.1|  242|Caenorhabditis elegans Hypothetical
           protein F58E6.6 protein.
          Length = 242

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 79  AVAPATISSISSKPTTRRLKAINLAN 2
           +V+P T+S+ +S P++R    I+++N
Sbjct: 141 SVSPTTVSTSTSIPSSRSFAVISVSN 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,407
Number of Sequences: 27780
Number of extensions: 37726
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 24
effective length of database: 12,073,478
effective search space used: 229396082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)