Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d17
(132 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 0.59
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 1.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 1.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 1.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 1.4
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 1.4
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 1.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 1.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 20 3.1
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 19 4.1
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 19 7.2
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 19 7.2
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 18 9.6
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 0.59
Identities = 10/40 (25%), Positives = 15/40 (37%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRSTWPI 1
Y T G H+ G SH +H S + + P+
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 120 YETDGGRHYIKSDGRSHRQQYRRY 49
Y DG R + R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 19.8 bits (39), Expect = 3.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 6 AKLIAFSRRVVGLDDIDD 59
A ++ F V+GLD ID+
Sbjct: 60 ATVVYFHVTVMGLDSIDE 77
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 102 RHYIKSDGRSHRQQYRRYHPSQQ 34
RH KSD +++ Q + H S +
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSK 455
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 18.6 bits (36), Expect = 7.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -2
Query: 80 GGRTGNNIVDIIQANNSPTEGDQL 9
G N DI+QA E DQL
Sbjct: 77 GNFNEKNTRDIVQAVLDDNETDQL 100
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 18.6 bits (36), Expect = 7.2
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = +3
Query: 12 LIAFSRRVVGLDDI 53
++ FS+R+ G D++
Sbjct: 389 IVEFSKRLPGFDEL 402
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 18.2 bits (35), Expect = 9.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 70 VRPPVTLDIMSAAVGFIMCFF 132
V P+T D+ AAV + F+
Sbjct: 101 VSHPLTGDLSPAAVSYTSGFY 121
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,117
Number of Sequences: 438
Number of extensions: 486
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used: 2580789
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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