Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d16
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     23   4.0  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    23   4.0  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    23   5.3  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    22   9.3  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    22   9.3  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 22  YNIKYAIDPTNKIVIEQV 75
           YNI+YA+ PT +I I ++
Sbjct: 623 YNIQYAMLPTKRISIRKL 640


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 90  CVHIVDLLYYNFICWIDCIF 31
           C H  ++L +NF   +DC F
Sbjct: 486 CTHSSEILVWNFDDGLDCTF 505


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 4   RTLWNWYNIKYAIDPTNK 57
           + LW+W+N K  +  T K
Sbjct: 214 KPLWSWHNSKSEVKKTRK 231


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 92  NASTLSTCSITILFVGSIAYLIL 24
           +A + S C IT+L +  IA L+L
Sbjct: 199 SADSKSGCCITVLIIILIALLVL 221


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   ERTLWNWYNIKYAIDPTNKIVIEQ 72
           E+   ++YN K + DPT+ ++ ++
Sbjct: 87  EKDAMSYYNSKLSEDPTHTVIYKR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,610
Number of Sequences: 5004
Number of extensions: 4328
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 17
effective length of database: 2,277,410
effective search space used: 40993380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)