Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d16
         (108 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    26   3.1  
AC006629-8|ABC48258.1|  312|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 98  CTNASTLSTCSITILFVGSIAYLILYQFHN 9
           C         ++ I+F+G I +LI Y F+N
Sbjct: 51  CKTGEVYVIIALVIIFLGFIGFLIGYNFYN 80


>AC006629-8|ABC48258.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.9 protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 76  RLALLQFYLLDRLHI*YYTNSI 11
           R+   Q Y+LD+L I +Y N +
Sbjct: 49  RIKFFQIYVLDQLGIGFYVNGV 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,826
Number of Sequences: 27780
Number of extensions: 25110
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 17
effective length of database: 12,267,938
effective search space used: 220822884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)