Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d16
         (108 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   2.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   3.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    19   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   9.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 1   ERTLWNWYN 27
           ER  WNW N
Sbjct: 836 ERPYWNWSN 844


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 68 SITILFVGSIAYLILY 21
          SIT++ +GSI ++I +
Sbjct: 52 SITLIVLGSIIFVISF 67


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -1

Query: 99 MHKCVHIVDLLYY 61
          +H C   +D LY+
Sbjct: 50 LHSCFQTMDRLYF 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 16   NWYNIKYAIDPTNK 57
            NW     A++PT+K
Sbjct: 1153 NWTPKMMAVEPTDK 1166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,322
Number of Sequences: 438
Number of extensions: 389
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)