Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d14
         (753 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   261   6e-70
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   261   6e-70
AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   261   6e-70
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   261   6e-70
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   165   8e-41
AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p pro...    40   0.004
AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA...    40   0.004
U65589-1|AAC47273.1|  694|Drosophila melanogaster Dfz2 protein.        29   9.0  
BT023785-1|AAZ41794.1|  694|Drosophila melanogaster LD10629p pro...    29   9.0  
AY069660-1|AAL39805.1|  876|Drosophila melanogaster LD43716p pro...    29   9.0  
AJ430595-1|CAD23246.1|  876|Drosophila melanogaster peptide O-xy...    29   9.0  
AE014296-3112|AAF49185.2|  694|Drosophila melanogaster CG9739-PB...    29   9.0  
AE014296-3111|AAF49184.1|  694|Drosophila melanogaster CG9739-PA...    29   9.0  
AE014296-431|AAF47625.1|  876|Drosophila melanogaster CG32300-PB...    29   9.0  

>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  261 bits (640), Expect = 6e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = -2

Query: 707 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 528
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 527 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 348
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 347 AKSIHHARILIRQRHIR 297
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  261 bits (640), Expect = 6e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = -2

Query: 707 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 528
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 527 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 348
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 347 AKSIHHARILIRQRHIR 297
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137


>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  261 bits (640), Expect = 6e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = -2

Query: 707 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 528
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 527 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 348
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 347 AKSIHHARILIRQRHIR 297
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137



 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 41/46 (89%), Positives = 43/46 (93%)
 Frame = -1

Query: 153 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 16
           RKQVVNIPSF+VRLDS KHIDFSLKSPFGGGRPGRVKRKNL+K  G
Sbjct: 139 RKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQG 184


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  261 bits (640), Expect = 6e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = -2

Query: 707 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 528
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 527 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 348
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 347 AKSIHHARILIRQRHIR 297
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137



 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 41/46 (89%), Positives = 43/46 (93%)
 Frame = -1

Query: 153 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 16
           RKQVVNIPSF+VRLDS KHIDFSLKSPFGGGRPGRVKRKNL+K  G
Sbjct: 139 RKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQG 184


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  165 bits (400), Expect = 8e-41
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = -2

Query: 707 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 528
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARE 59

Query: 527 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 348
           LLTL+EKD KRLF+G +L+RRLVRIGVL +   +     G +    L         +AGL
Sbjct: 60  LLTLDEKDAKRLFQGKSLVRRLVRIGVL-KSPHEARLRAGSEDSGLLGASSADAGVQAGL 118

Query: 347 AKSIHHARILIRQR 306
           AKSIHHAR+LIRQR
Sbjct: 119 AKSIHHARVLIRQR 132


>AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p
           protein.
          Length = 181

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = -2

Query: 626 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 447
           +E KI+  + ++ + +  +       IR+ A  +  L+  +P +      LL +L  +GV
Sbjct: 28  KENKILRRFHIQKREDYTKYNKLSREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGV 87

Query: 446 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 297
            ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 88  SND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136


>AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA
           protein.
          Length = 181

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = -2

Query: 626 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 447
           +E KI+  + ++ + +  +       IR+ A  +  L+  +P +      LL +L  +GV
Sbjct: 28  KENKILRRFHIQKREDYTKYNKLSREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGV 87

Query: 446 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 297
            ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 88  SND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136


>U65589-1|AAC47273.1|  694|Drosophila melanogaster Dfz2 protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 6   GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 185
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 186 *EHIWFQDIEFNKV 227
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>BT023785-1|AAZ41794.1|  694|Drosophila melanogaster LD10629p
           protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 6   GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 185
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 186 *EHIWFQDIEFNKV 227
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>AY069660-1|AAL39805.1|  876|Drosophila melanogaster LD43716p
           protein.
          Length = 876

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 10  PPPXSLAEVLPLDTSRTTSTERRFQREVNVLAR 108
           PPP + A V P   ++ T+ +  FQ E ++LAR
Sbjct: 56  PPPHAQARVQPPARTKLTAQQLGFQPECDILAR 88


>AJ430595-1|CAD23246.1|  876|Drosophila melanogaster peptide
           O-xylosyltransferase protein.
          Length = 876

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 10  PPPXSLAEVLPLDTSRTTSTERRFQREVNVLAR 108
           PPP + A V P   ++ T+ +  FQ E ++LAR
Sbjct: 56  PPPHAQARVQPPARTKLTAQQLGFQPECDILAR 88


>AE014296-3112|AAF49185.2|  694|Drosophila melanogaster CG9739-PB,
           isoform B protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 6   GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 185
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 186 *EHIWFQDIEFNKV 227
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>AE014296-3111|AAF49184.1|  694|Drosophila melanogaster CG9739-PA,
           isoform A protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 6   GSATLXPCGGSSS*HVQDDLHRTEISERSQCACQSPGAQ*MMGCSQLACGQLLSDKRLIL 185
           GS +  PC G +S + Q+        +   C+C+SP     +G  QL   Q  S   ++ 
Sbjct: 225 GSTSTKPCRGRNSKNCQNPQGEKASGKECSCSCRSPLI--FLGKEQLL--QQQSQMPMMH 280

Query: 186 *EHIWFQDIEFNKV 227
             H W+ ++   ++
Sbjct: 281 HPHHWYMNLTVQRI 294


>AE014296-431|AAF47625.1|  876|Drosophila melanogaster CG32300-PB
           protein.
          Length = 876

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 10  PPPXSLAEVLPLDTSRTTSTERRFQREVNVLAR 108
           PPP + A V P   ++ T+ +  FQ E ++LAR
Sbjct: 56  PPPHAQARVQPPARTKLTAQQLGFQPECDILAR 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,914,004
Number of Sequences: 53049
Number of extensions: 716822
Number of successful extensions: 1922
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)