Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d14
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 231 4e-61
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 34 0.12
U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protei... 29 4.7
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 29 4.7
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 29 4.7
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 29 4.7
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 6.2
Z69884-1|CAA93748.1| 313|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 231 bits (565), Expect = 4e-61
Identities = 110/133 (82%), Positives = 123/133 (92%)
Frame = -2
Query: 695 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 516
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 515 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 336
E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122
Query: 335 HHARILIRQRHIR 297
HHARILI+Q HIR
Sbjct: 123 HHARILIKQHHIR 135
Score = 84.6 bits (200), Expect = 7e-17
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = -1
Query: 153 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGXG 16
R+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG G
Sbjct: 137 RRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDG 182
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 587 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 411
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 410 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 297
+ F RRL + G+ +S+ A L+ Q H+R
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVR 136
>U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protein
1, isoform e protein.
Length = 527
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 10 PPPXSLAEVLPLDTSRTTSTERRFQREVNVLARVQAHNK*WDVHNLLADNYYQTNAS 180
PPP S LP++ R T T + E+ + +++ A DV + A+ Y++ +S
Sbjct: 190 PPPPSQMPQLPIEQDRPT-TSMITKEEIEIRSKIAALELELDVTHKKAEQYHEVLSS 245
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 10 PPPXSLAEVLPLDTSRTTSTERRFQREVNVLARVQAHNK*WDVHNLLADNYYQTNAS 180
PPP S LP++ R T T + E+ + +++ A DV + A+ Y++ +S
Sbjct: 224 PPPPSQMPQLPIEQDRPT-TSMITKEEIEIRSKIAALELELDVTHKKAEQYHEVLSS 279
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 10 PPPXSLAEVLPLDTSRTTSTERRFQREVNVLARVQAHNK*WDVHNLLADNYYQTNAS 180
PPP S LP++ R T T + E+ + +++ A DV + A+ Y++ +S
Sbjct: 321 PPPPSQMPQLPIEQDRPT-TSMITKEEIEIRSKIAALELELDVTHKKAEQYHEVLSS 376
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 10 PPPXSLAEVLPLDTSRTTSTERRFQREVNVLARVQAHNK*WDVHNLLADNYYQTNAS 180
PPP S LP++ R T T + E+ + +++ A DV + A+ Y++ +S
Sbjct: 384 PPPPSQMPQLPIEQDRPT-TSMITKEEIEIRSKIAALELELDVTHKKAEQYHEVLSS 439
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 377 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 511
+DA + Q+S A + + ++H V + E +GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>Z69884-1|CAA93748.1| 313|Caenorhabditis elegans Hypothetical
protein F31F6.1 protein.
Length = 313
Score = 27.9 bits (59), Expect = 8.2
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = -2
Query: 605 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 438
E G +R + LAR + R TL EKD +++F+ G ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165
Query: 437 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 318
K + + E+ R L T V G + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,474
Number of Sequences: 27780
Number of extensions: 356008
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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