Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d11
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    29   0.76 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   3.1  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    27   4.0  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    26   5.4  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.4  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
 Frame = +2

Query: 326 VIISETTTIYVRLRAQSCLWFKKKALLTIQKSRWSPHGNKPGTPSAIFIDVIFPAVDHXX 505
           +II + + +Y RL  +    FK    +  Q+  + P+  KP TP    +D+    + H  
Sbjct: 350 IIIDDRSLLY-RLTDKK---FKISVRVCSQRYPYPPNATKPATPLGYMLDICCIGIQHNM 405

Query: 506 XXXXXXXXXXNKQGFIWRRSTVIVTWGALTPFELLQ-----FHFIDRFYLNIDVS 655
                         F++R  T +V  G    +  L+     F F+D   + I+ S
Sbjct: 406 KLNLSATMYFLYFSFVYRAMTSLVQDGIRMEYHWLELWRVLFSFLDFVSVLINTS 460


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 559  PPYESLFVKPKCKGSEKRSKMINGREYYVYEDGRGGTRLIPVRT 428
            PP ESL  K K K S+      NG +      GRGG R  P+R+
Sbjct: 1268 PPPESLIHKSKSKFSKGNHHSTNGTQSI---RGRGGKRGKPLRS 1308


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 518 LRKTFEDDQRQGILRL*RWPRGYQAYSREDSIGF 417
           L+ +F DD   G+ R   W  GY   S+ DSI F
Sbjct: 231 LQSSFGDDLDLGMQRSATWAPGYNYPSKFDSIPF 264


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 219 PPYDTLQRETDYVDDEEMMTAAWLLLWLCRRTWMTVIT 106
           PP+ T Q   +    ++     W+LLW CR    T IT
Sbjct: 10  PPFFTRQLNDNTWHSQKAAWQMWILLW-CRENRQTSIT 46


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = -1

Query: 583 PRYDDSGPPPYE----SLFVKPKCKGSEKRSKMINGR 485
           PR  D  PPPY     S+F      G  +  K+IN R
Sbjct: 110 PRKSDEAPPPYSYNFLSMFGTAFLNGFRRGRKLINQR 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,669
Number of Sequences: 5004
Number of extensions: 57646
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)