Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d11
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701...    29   3.2  
02_05_0615 - 30364956-30365729,30365813-30366286                       29   5.6  

>04_04_1462 -
           33769122-33769151,33769385-33769426,33769571-33770158,
           33770398-33770508,33770585-33770625,33771238-33771382,
           33771578-33771781,33772626-33772769,33772991-33773183,
           33774559-33774602,33774694-33774822,33774907-33774954,
           33775058-33775120,33775198-33775236,33776694-33776767,
           33777460-33777518,33777709-33777768,33777920-33778044,
           33778693-33778751,33779418-33779511,33779572-33779625,
           33779775-33779813,33780423-33780602
          Length = 854

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 114 PSSMYVCKARVIAKPLSSFLHHQHSRFLFAEYHK 215
           PSS Y+ K   I K ++ +  HQH +F   E  K
Sbjct: 605 PSSEYISKENSIKKQVTRYKMHQHLKFHLGEISK 638


>02_05_0615 - 30364956-30365729,30365813-30366286
          Length = 415

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 371 QSCLWFKKKALLTIQKSRWSPHG-NKPGTPSAIFIDVI 481
           Q C+ + K  L +I + RW PHG + P   +A F+ ++
Sbjct: 95  QDCMKYGKPGLESILRWRWRPHGCDLPRFDAAAFLRLV 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,874,560
Number of Sequences: 37544
Number of extensions: 348436
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)