Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d11
         (790 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126112-1|AAI26113.1| 1237|Homo sapiens Ras protein-specific gu...    30   8.3  
AF181250-1|AAD55268.1| 1237|Homo sapiens Ras guanine nucleotide ...    30   8.3  
AF023130-1|AAB80953.1| 1237|Homo sapiens Ras-GRF2 protein.             30   8.3  

>BC126112-1|AAI26113.1| 1237|Homo sapiens Ras protein-specific
           guanine nucleotide-releasing factor 2 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 243 INKDST*SPPYDTLQRETDYVDDEEMMTAAWLLLWLCRRTWMTVI 109
           +NK      PY + Q + D    +     +++  WLCRR W T++
Sbjct: 185 LNKTKERMRPYQSNQEDEDPDIKKIKKVQSFMRGWLCRRKWKTIV 229


>AF181250-1|AAD55268.1| 1237|Homo sapiens Ras guanine nucleotide
           exchange factor 2 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 243 INKDST*SPPYDTLQRETDYVDDEEMMTAAWLLLWLCRRTWMTVI 109
           +NK      PY + Q + D    +     +++  WLCRR W T++
Sbjct: 185 LNKTKERMRPYQSNQEDEDPDIKKIKKVQSFMRGWLCRRKWKTIV 229


>AF023130-1|AAB80953.1| 1237|Homo sapiens Ras-GRF2 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 243 INKDST*SPPYDTLQRETDYVDDEEMMTAAWLLLWLCRRTWMTVI 109
           +NK      PY + Q + D    +     +++  WLCRR W T++
Sbjct: 185 LNKTKERMRPYQSNQEDEDPDIKKIKKVQSFMRGWLCRRKWKTIV 229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,955,720
Number of Sequences: 237096
Number of extensions: 2002458
Number of successful extensions: 3251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)