Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d11
         (790 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022775-1|AAY55191.1|  636|Drosophila melanogaster IP13956p pro...    40   0.003
BT022767-1|AAY55183.1|  636|Drosophila melanogaster IP13856p pro...    40   0.003
AE014296-3276|AAF49071.1|  636|Drosophila melanogaster CG7385-PA...    40   0.003
AY089253-1|AAL89991.1|  455|Drosophila melanogaster AT04270p pro...    29   9.6  
AE014297-2432|AAF55488.1|  455|Drosophila melanogaster CG7794-PA...    29   9.6  

>BT022775-1|AAY55191.1|  636|Drosophila melanogaster IP13956p
           protein.
          Length = 636

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = -1

Query: 502 KMINGREYYVYEDGRGGTRLIPVRTPSAFLYR 407
           ++INGR+Y V+ +  G ++L+PVR+PSA L++
Sbjct: 600 RLINGRDYMVFRNPNGQSQLVPVRSPSAALFQ 631



 Score = 32.3 bits (70), Expect = 0.78
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -3

Query: 734 LMMTYYIMCVGLASGLAVF 678
           LMMTYYIM  G A+ LAVF
Sbjct: 473 LMMTYYIMLAGFATALAVF 491


>BT022767-1|AAY55183.1|  636|Drosophila melanogaster IP13856p
           protein.
          Length = 636

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = -1

Query: 502 KMINGREYYVYEDGRGGTRLIPVRTPSAFLYR 407
           ++INGR+Y V+ +  G ++L+PVR+PSA L++
Sbjct: 600 RLINGRDYMVFRNPNGQSQLVPVRSPSAALFQ 631



 Score = 32.3 bits (70), Expect = 0.78
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -3

Query: 734 LMMTYYIMCVGLASGLAVF 678
           LMMTYYIM  G A+ LAVF
Sbjct: 473 LMMTYYIMLAGFATALAVF 491


>AE014296-3276|AAF49071.1|  636|Drosophila melanogaster CG7385-PA
           protein.
          Length = 636

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = -1

Query: 502 KMINGREYYVYEDGRGGTRLIPVRTPSAFLYR 407
           ++INGR+Y V+ +  G ++L+PVR+PSA L++
Sbjct: 600 RLINGRDYMVFRNPNGQSQLVPVRSPSAALFQ 631



 Score = 32.3 bits (70), Expect = 0.78
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -3

Query: 734 LMMTYYIMCVGLASGLAVF 678
           LMMTYYIM  G A+ LAVF
Sbjct: 473 LMMTYYIMLAGFATALAVF 491


>AY089253-1|AAL89991.1|  455|Drosophila melanogaster AT04270p
           protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 45  CINISVSFPSNLFYNFCTQTE*SPSSMYVCKARVIAKPLSSFLHHQ 182
           C ++S    +   Y+ C  T   P+  Y    R+IA+ +SSF   Q
Sbjct: 198 CADVSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQ 243


>AE014297-2432|AAF55488.1|  455|Drosophila melanogaster CG7794-PA
           protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 45  CINISVSFPSNLFYNFCTQTE*SPSSMYVCKARVIAKPLSSFLHHQ 182
           C ++S    +   Y+ C  T   P+  Y    R+IA+ +SSF   Q
Sbjct: 198 CADVSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQ 243


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,262,494
Number of Sequences: 53049
Number of extensions: 610501
Number of successful extensions: 1204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)