Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d11
(790 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 23 2.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 4.3
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 5.7
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 5.7
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 5.7
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 5.7
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 7.5
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 22 7.5
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 22 7.5
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 7.5
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 21 9.9
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 9.9
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 9.9
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 9.9
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 23.4 bits (48), Expect = 2.4
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +2
Query: 536 NKQGFIWRRSTVIVTWGALTPFELL 610
+K+ + WR ++V++ W A L+
Sbjct: 384 DKKQYTWRHTSVLIGWSAFLCISLV 408
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 271 LHNNNQYVIIYAYQNQSLSYNFRDDN 348
+HNNN Y Y Y N + + N ++N
Sbjct: 323 IHNNNNYK--YNYNNNNYNNNNYNNN 346
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 271 LHNNNQYVIIYAYQNQSLSYN 333
+HNNN Y Y + L YN
Sbjct: 90 IHNNNNYKYNYNNNCKKLYYN 110
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 109
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 342
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKL 342
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 268 VLHNNNQYVIIYAYQNQSLSYNFRDDNNL 354
++ NNN Y Y N +YN + N L
Sbjct: 81 IISNNNPLSNNYNYNNNYNNYNKHNYNKL 109
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.8 bits (44), Expect = 7.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 407 TIQKSRWSPHGNKPGTPSAIFIDVIF 484
TI +W+ + G PSA ID IF
Sbjct: 330 TISVQQWNSYWGILGFPSAPTIDGIF 355
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 549 NPCLLNRSAKAQKNVRR*ST 490
NPCL +R++ N+R+ S+
Sbjct: 105 NPCLPHRNSDRDLNIRKWSS 124
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.8 bits (44), Expect = 7.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 407 TIQKSRWSPHGNKPGTPSAIFIDVIF 484
TI +W+ + G PSA ID IF
Sbjct: 330 TISVQQWNSYWGILGFPSAPTIDGIF 355
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 448 WYPLGHLHRRNI 483
W LGH RRNI
Sbjct: 89 WVILGHSERRNI 100
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 274 HNNNQYVIIYAYQNQSLSYN 333
+NNN Y +Y + L YN
Sbjct: 91 YNNNNYKKLYCNNYKKLYYN 110
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 274 HNNNQYVIIYAYQNQSLSYN 333
+NNN Y +Y + L YN
Sbjct: 91 YNNNNYKKLYCNNYKKLYYN 110
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 274 HNNNQYVIIYAYQNQSLSYN 333
+NNN Y +Y + L YN
Sbjct: 91 YNNNNYKKLYCNNYRKLYYN 110
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,313
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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