Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d09
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   189   1e-48
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  189 bits (461), Expect = 1e-48
 Identities = 96/141 (68%), Positives = 106/141 (75%), Gaps = 1/141 (0%)
 Frame = -3

Query: 462 MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 286
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 285 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXX 106
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA           GAQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 105 XXXSMKIGRIEDVTPVPSDST 43
               MKIGRIEDVTP+PSD T
Sbjct: 121 ARAGMKIGRIEDVTPIPSDCT 141


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 408 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 280
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,522
Number of Sequences: 27780
Number of extensions: 327907
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)