Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18d06
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 191 6e-50
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 90 3e-19
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 64 2e-11
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 29 0.70
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 27 2.1
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.8
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 26 3.7
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 26 4.9
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 6.5
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 25 8.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.6
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 8.6
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 191 bits (466), Expect = 6e-50
Identities = 91/161 (56%), Positives = 113/161 (70%), Gaps = 4/161 (2%)
Frame = -3
Query: 510 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGE--IMGYIM 337
MT R F D+ FNN+NLDPLTET+ +SFY YL WP V ES + +MGYIM
Sbjct: 1 MTDTRKFKATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIM 60
Query: 336 GKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAI 157
GK+EG G+ WH HVTA+TV+P+ RRLGLA T+M+ LE V + A+FVDLFVR SN +AI
Sbjct: 61 GKSEGTGKEWHTHVTAITVAPNSRRLGLARTMMDYLETVGNSENAFFVDLFVRASNALAI 120
Query: 156 NMYKNLGYIVYRTVLEYYSG--DPDEDAYDMRKACSRDINK 40
+ YK LGY VYR V+ YYS DED++DMRK SRD+N+
Sbjct: 121 DFYKGLGYSVYRRVIGYYSNPHGKDEDSFDMRKPLSRDVNR 161
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 89.8 bits (213), Expect = 3e-19
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Frame = -3
Query: 501 LRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEG 322
+RP D+ N NL L E Y L +Y + WP V P G ++GY++ K E
Sbjct: 3 IRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKMEE 62
Query: 321 HGENW--HGHVTALTVSPDYRRLGLAATLM-NLLEEVSEKKKAYFVDLFVRVSNKVAINM 151
++ HGH+T+++V YR LGLA LM + E A ++ L VR SN+ AI++
Sbjct: 63 EPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAIHL 122
Query: 150 YKN-LGYIVYRTVLEYYSGDPDEDAYDMRK 64
Y++ L + V +YY+ EDAY M K
Sbjct: 123 YRDTLQFDVQGIESKYYA--DGEDAYAMHK 150
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 63.7 bits (148), Expect = 2e-11
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Frame = -3
Query: 510 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 331
M T+ P++ + + + L+E Y Y ++ WPE F V + +G ++ K
Sbjct: 1 MVTIVPYSHQYLKDICQLIQKDLSEPYSKYVYRYFVHQWPE-FSFVALDNDRFIGAVICK 59
Query: 330 AEGH-GENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAIN 154
+ H G G++ L + +YR G+A L +V + + A + L V N+ A++
Sbjct: 60 QDVHRGTTLRGYIAMLAIVKEYRGQGIATKLTQASLDVMKNRGAQEIVLETEVDNEAAMS 119
Query: 153 MYKNLGYIVYRTVLEYYSGDPDEDAY 76
Y+ LG+ Y+ + YY D Y
Sbjct: 120 FYERLGFCRYKRLYRYYLNGTDAFRY 145
>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 28.7 bits (61), Expect = 0.70
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = -3
Query: 300 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGY 133
H+ + V P + G+ L+++ +++++ Y + F+ S K+A MY++LGY
Sbjct: 149 HIHFVCVDPALQGNGVGGYLLDMAHDLADE---YQIPCFLMAS-KMAFKMYEHLGY 200
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 444 LTETYGLSFYTQY-LAHWPE 388
+++ YG++FY+ Y L HW E
Sbjct: 246 MSQNYGIAFYSSYDLIHWTE 265
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 288 LTVSPDYRRLGLAATLMNLLEEVSEKKKAY 199
LT+SP +LGL +++ LL V E+ K Y
Sbjct: 306 LTLSPQDLKLGLESSVNTLLAGVQEQLKQY 335
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 483 EDMLRFNNVNLDPLTETYGLSFYTQYLAH 397
ED L+ NN++ DP T + SF LAH
Sbjct: 222 EDFLKSNNISDDPYTSSVN-SFANDNLAH 249
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = -3
Query: 474 LRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMG---YIMGKAEGHGENWH 304
L F+ +N T T P+Y + S I G ++ GKAE
Sbjct: 297 LPFSEINTQLSTSTTHALMVNILGTDDPDYVSKIAKRSLSIPGATLHLYGKAESRKGRKM 356
Query: 303 GHVTALTVSP 274
GHVT ++ SP
Sbjct: 357 GHVTIISDSP 366
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = -3
Query: 312 NWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNL 139
N V L +S + GL + L ++ +K YF +FV ++ + +N+
Sbjct: 113 NVSAQVATLCLSMNILGSGLGPMFLGPLSDIGGRKPVYFCSIFVYTVFNISCALPRNI 170
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -3
Query: 378 VVESPSGEIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKK 205
++++P G ++GY++ + G NW ++ + VS + L L + L +E S +K+
Sbjct: 222 MMQTPGGFLIGYLLSRLP--GTNWTTYMMYI-VSACLQGLLLMLCMFYLHKEKSRRKR 276
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 354 IMGYIMGKAEGHGEN 310
I+GY++G + HGEN
Sbjct: 2221 IVGYVLGLGDRHGEN 2235
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 200 YAFFFSDTSSSKFINVAAS-PSLL*SGLTVK 289
Y F+FSD S K+ A S P L G+ +K
Sbjct: 234 YTFYFSDPSPKKYAADAFSLPKLFFEGVPIK 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,290
Number of Sequences: 5004
Number of extensions: 48340
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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