Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d06
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical ...   234   4e-62
AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...   105   3e-23
AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical...    61   5e-10
U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical pr...    54   6e-08
Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical pr...    38   0.006
U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...    34   0.092
U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.3 protein.
          Length = 173

 Score =  234 bits (572), Expect = 4e-62
 Identities = 103/157 (65%), Positives = 125/157 (79%)
 Frame = -3

Query: 510 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 331
           MTTLRPF   DM +FNNVNLD  TETYG  FY  Y+ ++PEY+QV E P+GEIM Y+MGK
Sbjct: 1   MTTLRPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGK 60

Query: 330 AEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINM 151
            EG   NWHGHVTAL+V+P++RRLGLAA +M  LE  SE ++AYFVDLFVRVSNK+AI +
Sbjct: 61  IEGRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTSEARRAYFVDLFVRVSNKIAIEL 120

Query: 150 YKNLGYIVYRTVLEYYSGDPDEDAYDMRKACSRDINK 40
           YK LGY+VYR ++ YY+GD DEDA+DMRK+ SRD  K
Sbjct: 121 YKKLGYVVYRQIIGYYTGDRDEDAFDMRKSLSRDPEK 157


>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score =  105 bits (251), Expect = 3e-23
 Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
 Frame = -3

Query: 483 EDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK-AEGHGENW 307
           +D++   N NL  L E Y + +Y  +   WP+   + E   G ++GY++ K  E  GE  
Sbjct: 9   DDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKMEEDPGEEP 68

Query: 306 HGHVTALTVSPDYRRLGLAATLMN-LLEEVSEKKKAYFVDLFVRVSNKVAINMYKN-LGY 133
           HGH+T+L V   YRRLGLA  +M+     + E   A +V L VRVSN+ A+N+YKN L +
Sbjct: 69  HGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALNLYKNTLKF 128

Query: 132 IVYRTVLEYYSGDPDEDAYDMRK 64
            +  T  +YY+    EDAY MR+
Sbjct: 129 EIVDTEPKYYA--DGEDAYAMRR 149


>AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical
           protein B0238.10 protein.
          Length = 278

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
 Frame = -3

Query: 444 LTETYGLSFYTQYLAHWPEY-FQVVESPSGEIMGYIMGKAE--GHGENWHGHVTALTVSP 274
           L+E Y +  Y  +L +WPEY F   +  +   +G ++ K E   +G    G++  L V  
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGR-CKGYLAMLAVDE 175

Query: 273 DYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGYIVYRTVLEYYSGD 94
             RRLG+   L+    +  + K    + L   VSNK A  +Y NLG+I  + +L+YY   
Sbjct: 176 SCRRLGIGTRLVRRALDAMQSKGCDEIVLETEVSNKNAQRLYSNLGFIRQKRLLKYYLNG 235

Query: 93  PD 88
            D
Sbjct: 236 GD 237


>U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical
           protein F54E7.9 protein.
          Length = 167

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 33/100 (33%), Positives = 49/100 (49%)
 Frame = -3

Query: 363 SGEIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLF 184
           +GE +  +  K E        ++ +  V P +R  GL + LM+ ++E  +  K     L 
Sbjct: 65  NGEAIAIVAVKPENFETGRVLYIRSFGVHPRHREAGLGSFLMDFVDEKGKLLKLPHAMLH 124

Query: 183 VRVSNKVAINMYKNLGYIVYRTVLEYYSGDPDEDAYDMRK 64
           V+ SNK AI  YKN G+ V   V +YY      DA+ MRK
Sbjct: 125 VQTSNKTAIEFYKNRGFNVDCLVPQYYQRCSPPDAFIMRK 164


>Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical
           protein D2023.4 protein.
          Length = 160

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -3

Query: 300 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGYI 130
           H+  L + P +RR+GLA TL   L E++  K    ++  V   NK AI +Y  + Y+
Sbjct: 80  HMEDLYIRPQFRRMGLARTLWKKLAELARDKGIVRLEWAVLDWNKNAIALYDTVDYV 136


>Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical
           protein F30F8.10b protein.
          Length = 215

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -3

Query: 300 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRV--SNKVAINMYKNLGYIV 127
           ++ ++ V   +RRLGLA  L+N L         Y   +F+ V  +N  A++ YK  G+  
Sbjct: 99  YILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFYKMHGFEF 158

Query: 126 YRTVLEYY 103
           + ++ EYY
Sbjct: 159 HASLPEYY 166


>Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical
           protein F30F8.10a protein.
          Length = 242

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -3

Query: 300 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRV--SNKVAINMYKNLGYIV 127
           ++ ++ V   +RRLGLA  L+N L         Y   +F+ V  +N  A++ YK  G+  
Sbjct: 126 YILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFYKMHGFEF 185

Query: 126 YRTVLEYY 103
           + ++ EYY
Sbjct: 186 HASLPEYY 193


>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
 Frame = -3

Query: 501 LRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEG 322
           L   T  ++L+   +N D     Y   FY +  A +      +   +  ++G +  + + 
Sbjct: 98  LGEITPHNILQLKKLNEDVFPIAYNDKFYVE--ARYCGELGRLAYYNDVVVGAVCCRIDD 155

Query: 321 HGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEK-KKAYFVDLFVRVSNKVAINMYK 145
             +    ++  L     YR++G+   L++   ++  K ++   + L V+V+NK A+  Y+
Sbjct: 156 ISDEKSLYLMTLGTLAAYRQIGIGTILIDYALKLCNKMEEIKTMYLHVQVNNKNAVQFYE 215

Query: 144 NLGYIVYRTVLEYYSGDPDEDAY 76
             G+     + +YY   P  DAY
Sbjct: 216 KHGFTNDGIIEDYYRISP-RDAY 237


>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 357 EIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVD 190
           ++MG  + KA G+ ENW     A TV+ D     +      +  EV  ++K   V+
Sbjct: 729 DLMGSALEKAFGNQENWTDKSAAKTVTSDAITNAIETKFTGISREVLLEQKERLVE 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,024,199
Number of Sequences: 27780
Number of extensions: 263376
Number of successful extensions: 607
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)