Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d03
         (216 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08358 Cluster: Protein p26; n=9; Nucleopolyhedrovirus|...   107   6e-23
UniRef50_P11037 Cluster: Protein p26; n=8; Nucleopolyhedrovirus|...    55   3e-07
UniRef50_Q80LR5 Cluster: P26; n=4; Nucleopolyhedrovirus|Rep: P26...    35   0.41 

>UniRef50_P08358 Cluster: Protein p26; n=9;
           Nucleopolyhedrovirus|Rep: Protein p26 - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 240

 Score =  107 bits (256), Expect = 6e-23
 Identities = 53/71 (74%), Positives = 57/71 (80%)
 Frame = -2

Query: 215 RPNMSVYXTVQXPCDKIKRHALEQENXTPNAWESXVLFYXDSEMXITYXQGGRTEIMHLR 36
           RPNMSVY TVQ P DKIK+HALEQEN TPNA ES VLFY DSE+ ITY +G   EIMHLR
Sbjct: 168 RPNMSVYGTVQLPYDKIKQHALEQENKTPNALESCVLFYKDSEIRITYNKGD-YEIMHLR 226

Query: 35  MSXPVIQPNTI 3
           M  P+IQPNTI
Sbjct: 227 MPGPLIQPNTI 237


>UniRef50_P11037 Cluster: Protein p26; n=8;
           Nucleopolyhedrovirus|Rep: Protein p26 - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 230

 Score = 55.2 bits (127), Expect = 3e-07
 Identities = 27/66 (40%), Positives = 39/66 (59%)
 Frame = -2

Query: 215 RPNMSVYXTVQXPCDKIKRHALEQENXTPNAWESXVLFYXDSEMXITYXQGGRTEIMHLR 36
           R   SVY  VQ P +++K HA  +     +A ES  LFY DSE+ IT+ + G  E+MH R
Sbjct: 161 RAGRSVYGPVQLPYEQLKAHAFRKRRPRRDAAESCALFYNDSEVRITFNK-GEFELMHWR 219

Query: 35  MSXPVI 18
           +  P++
Sbjct: 220 LPGPLV 225


>UniRef50_Q80LR5 Cluster: P26; n=4; Nucleopolyhedrovirus|Rep: P26 -
           Adoxophyes honmai nucleopolyhedrovirus
          Length = 268

 Score = 34.7 bits (76), Expect = 0.41
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -2

Query: 206 MSVYXTVQXPCDKIKRHALE---QENXTPNAWESXVLFYXDSEMXITYXQGGRTEIMHLR 36
           MSVY   Q P   +KRHA+     +    N   S  +FY D ++ I   + G  EI  +R
Sbjct: 195 MSVYGKRQLPYMALKRHAINISANKKLYRNMPRSVAVFYNDRDITIALVE-GEYEIDRIR 253

Query: 35  MSXPVIQPNT 6
           ++ P++  +T
Sbjct: 254 LNGPLLAGHT 263


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,746,537
Number of Sequences: 1657284
Number of extensions: 2204706
Number of successful extensions: 2544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2543
length of database: 575,637,011
effective HSP length: 50
effective length of database: 492,772,811
effective search space used: 10348229031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)