Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d03
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   2.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   3.1  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    23   5.5  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    23   7.2  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    23   7.2  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 115 LVCYFTXIQKXASLTXRGDVLKLCI*GCXDR 23
           L CY    +    LT   + LK C  GC DR
Sbjct: 649 LCCYEGDEKDEERLTVISEFLKSCFSGCQDR 679


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 166  LNGMRSSKKIXRQTRGSLVCYFTXIQKXASLTXRGDVLKL 47
            L G  SS +I + T  +++C  T I K  +L+    +LKL
Sbjct: 1191 LAGEDSSDEI-KATMSAIICKLTIIGKNYTLSVLDQILKL 1229


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 190 LCXSRAIKLNGMRSSKKIXRQTRGSLVCY 104
           +C S  + +  + +S  I + TRGSL+ +
Sbjct: 86  ICGSTLMNVGLLYTSASIYQMTRGSLIIF 114


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 199 FTXLCXSRAIKLNGMRSSKKIXRQTRGSLVCYFTXI 92
           F+  C S  + +     +     +TRG  VC F  I
Sbjct: 195 FSGFCASSPLSVVAAAFADMFDNKTRGPAVCIFACI 230


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   YIVLG*ITGXDILKCIISVRPPXL 72
           +I  G ITG  +L  ++S+ PP L
Sbjct: 191 FIESGVITGYGVLTFLVSMFPPSL 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,856
Number of Sequences: 5004
Number of extensions: 9595
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)