Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d03
         (216 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069493-1|AAL39638.1| 1256|Drosophila melanogaster LD22119p pro...    27   3.6  
AE014134-2324|AAF53278.2| 1256|Drosophila melanogaster CG31729-P...    27   3.6  

>AY069493-1|AAL39638.1| 1256|Drosophila melanogaster LD22119p
           protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 163 NGMRSSKKIXRQTRGSLVCYFTXIQKXASLTXRGDVLKLCI*GCXDR*FNPTQ 5
           NG   S  +     GS   ++   ++ +     G+V KLC+  C  + F P +
Sbjct: 160 NGATHSTTVIDPENGSSTVFYQHNRRKSKSRSIGNVCKLCLCSCWRKWFRPRE 212


>AE014134-2324|AAF53278.2| 1256|Drosophila melanogaster CG31729-PB,
           isoform B protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 163 NGMRSSKKIXRQTRGSLVCYFTXIQKXASLTXRGDVLKLCI*GCXDR*FNPTQ 5
           NG   S  +     GS   ++   ++ +     G+V KLC+  C  + F P +
Sbjct: 160 NGATHSTTVIDPENGSSTVFYQHNRRKSKSRSIGNVCKLCLCSCWRKWFRPRE 212


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,573,526
Number of Sequences: 53049
Number of extensions: 110722
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 24,988,368
effective HSP length: 51
effective length of database: 22,282,869
effective search space used: 445657380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)