Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18d03
         (216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   2.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   6.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   6.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   6.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 103 NSTXDSHAFGVLF--SCSSACRL 165
           +S+ D +AFG+LF   C+   RL
Sbjct: 771 DSSVDVYAFGILFWYLCAGHVRL 793


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 103 NSTXDSHAFGVLF--SCSSACRL 165
           +S+ D +AFG+LF   C+   RL
Sbjct: 809 DSSVDVYAFGILFWYLCAGHVRL 831


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 176  CDKIKRHALEQENXTPNAWE 117
            CD+IKR  + +   + + W+
Sbjct: 1664 CDRIKRGTVIRSIRSHSTWD 1683


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 210 QHVCLRDCAXPVR 172
           +H C+ DC   VR
Sbjct: 340 EHPCVMDCKVGVR 352


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 210 QHVCLRDCAXPVR 172
           +H C+ DC   VR
Sbjct: 255 EHPCVMDCKVGVR 267


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 210 QHVCLRDCAXPVR 172
           +H C+ DC   VR
Sbjct: 574 EHPCVMDCKVGVR 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,526
Number of Sequences: 438
Number of extensions: 748
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)