Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c23
(279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 1.5
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 2.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 3.5
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 24 4.6
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 6.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 23 6.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 23 8.0
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 23 8.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 8.0
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 23 8.0
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 1.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 23 IGKSYKSSGFRSTMGIRVLGPGWYPEDPAFIVLTRSAASLVRAWTVAVC 169
IGK+ S S + I +LG + P D V +A+SL+++ +V C
Sbjct: 707 IGKNAASKD--SQIAIGILGERYLPADEPSSVKANNASSLLQSSSVIKC 753
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.0 bits (52), Expect = 2.0
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -1
Query: 222 TINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNPE 43
TI + + AK+ D+LT L + A +V + Y P P + + + L P+
Sbjct: 248 TIQFNWERAKVF-DRLTTMIILENCLECKTAKVVNITQKPKTKYKPLPLSTVELTKLGPK 306
Query: 42 DL 37
L
Sbjct: 307 HL 308
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.2 bits (50), Expect = 3.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 239 PSNTGTPSIIIGTLPSFSLISSQ 171
PSN GT S++ G + S ISS+
Sbjct: 601 PSNVGTFSMVRGAINSLQNISSE 623
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.8 bits (49), Expect = 4.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 252 NANWAIQHRDTINYYRDAAKLLTDKLTGQTATV 154
N+ +A+ N+ D KLL K+TG A++
Sbjct: 184 NSGFALAPIACYNHTSDLRKLLKHKVTGSNASI 216
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 206 GTLPSFSLISSQDRLLQSKPLPMKPLI*LEQ*MQDPLDTTQGL 78
GTL S+++ LQ + P+ P + + +QD T GL
Sbjct: 212 GTLTSYTISCMVINFLQKRDPPILPSLQMLPHLQDSSTMTDGL 254
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.4 bits (48), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 264 DGILNANWAIQHRDTINYYRDAAKLLTDKLTGQTATVQALTNEAADLV 121
DG+ +A + D Y + KL+ D + Q L +EAADL+
Sbjct: 1019 DGLRTLMYAHRFIDESEY--QSWKLVNDAALNSLSNRQQLLDEAADLI 1064
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -2
Query: 239 PSNTGTPSIIIGTLPSFSLISSQDRLLQSKPLPMKPLI*LEQ 114
P N P I + P+F +L+ S P K +I + Q
Sbjct: 1903 PENKAHPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQ 1944
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 23.0 bits (47), Expect = 8.0
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -1
Query: 243 WAIQHRDTINYYRD 202
WA+ RD +++Y+D
Sbjct: 46 WAVLRRDQLSFYKD 59
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 63 MVDLNPEDL*DLPIIPRLIS 4
+ L +DL DLP +PR+ S
Sbjct: 749 LASLAHDDLDDLPAVPRIFS 768
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 242 GPSNTGTPSIIIGTLPSFSL 183
GP+ GTPSI + P S+
Sbjct: 177 GPTVNGTPSIYLDVRPKLSV 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,914
Number of Sequences: 5004
Number of extensions: 20388
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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