Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c23
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0669 + 23321168-23321438,23321517-23321740,23321847-233220... 29 0.70
09_01_0048 + 833872-834122,834255-834314,834818-835112,835775-83... 28 1.2
11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242 27 1.6
11_06_0616 + 25546175-25546359,25546778-25546837,25546939-255469... 27 2.1
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 2.1
02_05_0866 - 32331629-32334328 27 2.1
03_02_1018 + 13234436-13234729,13235301-13235423 27 2.8
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 27 2.8
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 27 2.8
08_02_0960 + 23058393-23059739 26 3.7
07_01_1101 + 10122804-10123758,10123872-10123910,10124072-101242... 26 3.7
04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124... 26 3.7
08_02_0959 - 23055078-23055177,23055408-23055985 26 4.9
01_05_0415 - 21940466-21941536 26 4.9
01_07_0277 + 42438359-42438811,42439194-42439817 25 6.5
>06_03_0669 +
23321168-23321438,23321517-23321740,23321847-23322094,
23322193-23322595,23322698-23323165
Length = 537
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 71 RVLGPGWYPEDPAFIV--LTRSAASLVRAWTVAVC 169
RVL PG+YP++ +V + RS A+L W C
Sbjct: 153 RVLTPGFYPDNLNRLVPHVGRSVAALAERWRAMAC 187
>09_01_0048 +
833872-834122,834255-834314,834818-835112,835775-835894
Length = 241
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 151 LDCSSLSCELISEKLGSVPIIIDGVPVLDGPVGIQDSIIF 270
LD + + +LI+ +G IID VP++ +G+ D F
Sbjct: 118 LDANIPNADLIASAIGVASAIIDNVPLVAATMGMYDLTSF 157
>11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242
Length = 544
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 276 SQKDDGILNANWAIQHRDTINYYRDAAKLLTDKLTGQTATVQALTN 139
+ + D ++ NWA+ DT Y + +++DK V + N
Sbjct: 152 NHQQDALVRDNWALFFSDTYRYQKMLTSIISDKKERNFKRVMEVAN 197
>11_06_0616 +
25546175-25546359,25546778-25546837,25546939-25546957,
25547948-25547998,25548097-25548230,25548558-25548948,
25549840-25549890
Length = 296
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 2 MEISLGIIGKSYKSSGFRSTMGIRVLGPGWYPEDPAFI 115
M++ LG+ G SS F G P PEDP+ +
Sbjct: 110 MKLPLGLTGDPNTSSWFHGGGGAEAQQPMMLPEDPSLL 147
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = -1
Query: 273 QKDDGILNANW-AIQHRDTINYYRDAAKLLTDKLTGQTATVQALT-NEAADLVRTMN--- 109
Q++DG+ N I +DT +Y +A K LTD L + T + T + + L+ ++
Sbjct: 445 QRNDGLGEINGDIITSKDTSIFYEEAKKHLTDILEYNSHTTKHPTVHTSKSLIGMLSLPQ 504
Query: 108 AGSSGYHPGPSTLIPMVDLNPEDL 37
+S P L +DL+PE++
Sbjct: 505 RNASSPRSSP-RLKGRIDLSPEEI 527
>02_05_0866 - 32331629-32334328
Length = 899
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +1
Query: 58 YHGDKGTRPWVV-SRGSCIH--CSN*ISGFIGKGLDCSSLSCELISEKLGSV 204
Y+ ++ +RP +V S GS CS S +G D SSLSC L+ ++GS+
Sbjct: 357 YYANRFSRPDMVGSNGSSCQALCSGNCS-CLGYFYDESSLSCFLVQHQIGSL 407
>03_02_1018 + 13234436-13234729,13235301-13235423
Length = 138
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -1
Query: 225 DTINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNP 46
DT+ YR A+L T + TG+ L ++ R + + G+ + + M DL
Sbjct: 51 DTVQLYRMNAELFTSRATGELLPQGVLRVQSIFAERVHDLDTLGHLTRAAIALDMEDLKD 110
Query: 45 E 43
E
Sbjct: 111 E 111
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 267 DDGILNAN-WAIQHRDT---INYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGS 100
+D + AN W + + + I++ + L K++G+TA+ + ADL NA
Sbjct: 266 EDTLARANAWILSSQSSGVPISFLNVQTEALLTKISGETASATVNSGSLADLPNLANASL 325
Query: 99 SGY 91
G+
Sbjct: 326 YGF 328
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 126 LVRTMNAGSSGYHPGPSTLIPMVDLNPEDL 37
+VR +N GS+ +HP TLI + D ED+
Sbjct: 86 IVRPLNKGSAVHHPRTRTLITVHDGILEDV 115
>08_02_0960 + 23058393-23059739
Length = 448
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 245 TGPSNTGTPSIIIGTLPSFSLISSQDRLLQSKPLPMKPLI 126
+G TP ++ LPS +S + L K LP+ PL+
Sbjct: 270 SGSPVQSTPLVVNAALPSLYFMSLKGISLGQKRLPIDPLV 309
>07_01_1101 +
10122804-10123758,10123872-10123910,10124072-10124251,
10124841-10124951,10125448-10125560
Length = 465
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -1
Query: 204 DAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNPEDL*DLP 25
DAA LT A V+A + + + Y+P PS L ++ P D + P
Sbjct: 262 DAAPFLTVSAAADPAAVEAAMGAIEAMRNSSKDPDAPYYPMPSPLHGHNEVGPNDYPENP 321
Query: 24 II 19
I
Sbjct: 322 AI 323
>04_01_0120 +
1241241-1241321,1242827-1242857,1242999-1243612,
1243726-1243796,1244233-1244478,1245267-1245393,
1245993-1246185,1246656-1247209
Length = 638
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +1
Query: 148 GLDCSSLSCELISEKLGSVPIIIDGVPVL-----DGPV 246
G+D SLS E LG++ ++ G+PV+ DGPV
Sbjct: 169 GVDVLSLSLGSPLEDLGTLHVVAKGIPVVYSAGNDGPV 206
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 224 TPSIIIGTLPSFSLISSQDRLLQSKPLPMKPLI 126
TP ++ LPS +S + L K LP+ PL+
Sbjct: 58 TPLVVNAALPSLYFMSLKGISLGQKRLPIDPLV 90
>01_05_0415 - 21940466-21941536
Length = 356
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -1
Query: 225 DTINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTL 70
+T + Y++ L D ++G A + L ADL PGP L
Sbjct: 278 ETYDGYKEEDALAVDPVSGAQAGIGVLGGSGADLQENTGILLGADEPGPGEL 329
>01_07_0277 + 42438359-42438811,42439194-42439817
Length = 358
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +1
Query: 64 GDKGTRPWVVSRGSCIHCSN*ISGFIGKGLDCSSLSCELISEKLGSVPIIIDGVPVLDGP 243
G++ P + R S N I + K S +SC I ++ G P P
Sbjct: 101 GERQAPPNLTLRPSAFKAVNDIRDRLEKACGASVVSCSDILALAARDSVVASGGPEYKVP 160
Query: 244 VGIQDSIIF 270
+G +DS F
Sbjct: 161 LGRRDSAEF 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,065,476
Number of Sequences: 37544
Number of extensions: 149061
Number of successful extensions: 400
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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