Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c23
(279 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91980-1|AAC47506.1| 2346|Drosophila melanogaster Tpr homolog pr... 30 0.38
AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA... 30 0.38
AY118561-1|AAM49930.1| 359|Drosophila melanogaster LD38742p pro... 30 0.51
AE014298-2620|AAF48771.3| 359|Drosophila melanogaster CG6506-PA... 30 0.51
AE014296-3779|EAL24540.1| 366|Drosophila melanogaster CG17698-P... 29 0.88
AE014296-3778|EAL24539.1| 676|Drosophila melanogaster CG17698-P... 29 0.88
AE014296-3777|EAL24538.1| 676|Drosophila melanogaster CG17698-P... 29 0.88
BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p pro... 29 1.2
AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisom... 29 1.2
AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-P... 29 1.2
AE013599-1821|AAF58297.2| 260|Drosophila melanogaster CG13353-P... 28 1.5
AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4 ... 28 2.0
AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear prot... 28 2.0
AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB ... 28 2.0
AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p pro... 27 2.7
AY069586-1|AAL39731.1| 1916|Drosophila melanogaster LD32687p pro... 27 4.7
AE014134-2071|AAF53101.1| 1916|Drosophila melanogaster CG6509-PB... 27 4.7
AE014134-2070|AAF53102.1| 1916|Drosophila melanogaster CG6509-PA... 27 4.7
AE014296-3073|AAN11672.1| 704|Drosophila melanogaster CG3961-PC... 26 6.2
AE014296-3072|AAF49219.1| 704|Drosophila melanogaster CG3961-PA... 26 6.2
AY069571-1|AAL39716.1| 894|Drosophila melanogaster LD30953p pro... 26 8.2
AF146345-1|AAD35017.1| 700|Drosophila melanogaster Ebi protein. 26 8.2
AE014134-100|AAF51501.1| 700|Drosophila melanogaster CG4063-PA ... 26 8.2
AE013599-210|AAM70818.2| 894|Drosophila melanogaster CG3409-PA ... 26 8.2
>U91980-1|AAC47506.1| 2346|Drosophila melanogaster Tpr homolog
protein.
Length = 2346
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 207 RDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPG 82
+D K L +KLT T++ L +E LV ++NA Y G
Sbjct: 1036 QDDLKSLLEKLTEANCTIRTLRSENTSLVESLNAAEVKYANG 1077
>AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA
protein.
Length = 2346
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 207 RDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPG 82
+D K L +KLT T++ L +E LV ++NA Y G
Sbjct: 1036 QDDLKSLLEKLTEANCTIRTLRSENTSLVESLNAAEVKYANG 1077
>AY118561-1|AAM49930.1| 359|Drosophila melanogaster LD38742p
protein.
Length = 359
Score = 29.9 bits (64), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 189 LTDKLTGQTATVQALTNEAADLVRTMNA--GSSGYHPGPSTLIPMVDLNPEDL*DL 28
L L QT V T L+ T + GSS Y P +IP VD PE+ +L
Sbjct: 53 LRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDFPPENAAEL 108
>AE014298-2620|AAF48771.3| 359|Drosophila melanogaster CG6506-PA
protein.
Length = 359
Score = 29.9 bits (64), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 189 LTDKLTGQTATVQALTNEAADLVRTMNA--GSSGYHPGPSTLIPMVDLNPEDL*DL 28
L L QT V T L+ T + GSS Y P +IP VD PE+ +L
Sbjct: 53 LRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDFPPENAAEL 108
>AE014296-3779|EAL24540.1| 366|Drosophila melanogaster CG17698-PA,
isoform A protein.
Length = 366
Score = 29.1 bits (62), Expect = 0.88
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 136 FIGKGLDCSSLSCELISEKLGSVPIIIDGVPVLDGPVGIQDSIIF 270
+ G+ D +L L S G+VP + D VP+L + QDS+ F
Sbjct: 165 YCGRAADVWALGATLYSLIFGNVPFLADSVPLLYEKIK-QDSVKF 208
>AE014296-3778|EAL24539.1| 676|Drosophila melanogaster CG17698-PC,
isoform C protein.
Length = 676
Score = 29.1 bits (62), Expect = 0.88
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 136 FIGKGLDCSSLSCELISEKLGSVPIIIDGVPVLDGPVGIQDSIIF 270
+ G+ D +L L S G+VP + D VP+L + QDS+ F
Sbjct: 475 YCGRAADVWALGATLYSLIFGNVPFLADSVPLLYEKIK-QDSVKF 518
>AE014296-3777|EAL24538.1| 676|Drosophila melanogaster CG17698-PB,
isoform B protein.
Length = 676
Score = 29.1 bits (62), Expect = 0.88
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 136 FIGKGLDCSSLSCELISEKLGSVPIIIDGVPVLDGPVGIQDSIIF 270
+ G+ D +L L S G+VP + D VP+L + QDS+ F
Sbjct: 475 YCGRAADVWALGATLYSLIFGNVPFLADSVPLLYEKIK-QDSVKF 518
>BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p
protein.
Length = 1250
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 225 DTINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHP 85
+ I Y+ A + +TDK+T A + A NE + G+ G P
Sbjct: 601 EQIAKYKQAYQQITDKITAMDAKISARINETPAANSAVQEGADGSAP 647
>AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA
topoisomerase III alpha protein.
Length = 1250
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 225 DTINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHP 85
+ I Y+ A + +TDK+T A + A NE + G+ G P
Sbjct: 601 EQIAKYKQAYQQITDKITAMDAKISARINETPAANSAVQEGADGSAP 647
>AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-PA
protein.
Length = 1250
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 225 DTINYYRDAAKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHP 85
+ I Y+ A + +TDK+T A + A NE + G+ G P
Sbjct: 601 EQIAKYKQAYQQITDKITAMDAKISARINETPAANSAVQEGADGSAP 647
>AE013599-1821|AAF58297.2| 260|Drosophila melanogaster CG13353-PA
protein.
Length = 260
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 224 TPSIIIGTLPSFSLISSQDRLLQSKPLPM 138
+P + IGTL S L+ + +L +SKP P+
Sbjct: 55 SPILTIGTLSSILLVYAASKLARSKPSPI 83
>AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4
protein.
Length = 2342
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 174 TGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNPED 40
TG + ALT + + SS H +IP+VDLN +D
Sbjct: 1736 TGASVLATALTTPLTSHSSSSASISSEQHSSVDPVIPLVDLNDDD 1780
>AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear protein
EAST protein.
Length = 2362
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 174 TGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNPED 40
TG + ALT + + SS H +IP+VDLN +D
Sbjct: 1747 TGASVLATALTTPLTSHSSSSASISSEQHSSVDPVIPLVDLNDDD 1791
>AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB
protein.
Length = 2301
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 174 TGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNPED 40
TG + ALT + + SS H +IP+VDLN +D
Sbjct: 1695 TGASVLATALTTPLTSHSSSSASISSEQHSSVDPVIPLVDLNDDD 1739
>AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p protein.
Length = 2176
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 174 TGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIPMVDLNPED 40
TG + ALT + + SS H +IP+VDLN +D
Sbjct: 1571 TGASVLATALTTPLTSHSSSPASISSEQHSSVDPVIPLVDLNDDD 1615
>AY069586-1|AAL39731.1| 1916|Drosophila melanogaster LD32687p
protein.
Length = 1916
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 246 NWAIQHRDTINYYRDAAKLLTDKL 175
+WAI R+ I RD+ K L DK+
Sbjct: 348 DWAISQREKIVQERDSVKTLCDKM 371
>AE014134-2071|AAF53101.1| 1916|Drosophila melanogaster CG6509-PB,
isoform B protein.
Length = 1916
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 246 NWAIQHRDTINYYRDAAKLLTDKL 175
+WAI R+ I RD+ K L DK+
Sbjct: 348 DWAISQREKIVQERDSVKTLCDKM 371
>AE014134-2070|AAF53102.1| 1916|Drosophila melanogaster CG6509-PA,
isoform A protein.
Length = 1916
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 246 NWAIQHRDTINYYRDAAKLLTDKL 175
+WAI R+ I RD+ K L DK+
Sbjct: 348 DWAISQREKIVQERDSVKTLCDKM 371
>AE014296-3073|AAN11672.1| 704|Drosophila melanogaster CG3961-PC,
isoform C protein.
Length = 704
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 209 IGTLPSFSLISSQDRLLQSKPLPMKPLI*LEQ*MQDPL 96
+GTL SL +S ++P+P +PL+ LE Q PL
Sbjct: 37 LGTLTLGSLAASVAYYFATRPVPERPLVPLEN--QSPL 72
>AE014296-3072|AAF49219.1| 704|Drosophila melanogaster CG3961-PA,
isoform A protein.
Length = 704
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 209 IGTLPSFSLISSQDRLLQSKPLPMKPLI*LEQ*MQDPL 96
+GTL SL +S ++P+P +PL+ LE Q PL
Sbjct: 37 LGTLTLGSLAASVAYYFATRPVPERPLVPLEN--QSPL 72
>AY069571-1|AAL39716.1| 894|Drosophila melanogaster LD30953p
protein.
Length = 894
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 198 AKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIP 64
AKL TD + +A+ N ++ N G+S Y P T P
Sbjct: 2 AKLATDPNASNNNSCEAVNNNHNGQNQSQNGGASNYQALPLTPAP 46
>AF146345-1|AAD35017.1| 700|Drosophila melanogaster Ebi protein.
Length = 700
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 67 DKGTRPWVVSRGSCIH 114
D R W V RGSCIH
Sbjct: 606 DSTVRLWDVERGSCIH 621
>AE014134-100|AAF51501.1| 700|Drosophila melanogaster CG4063-PA
protein.
Length = 700
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 67 DKGTRPWVVSRGSCIH 114
D R W V RGSCIH
Sbjct: 606 DSTVRLWDVERGSCIH 621
>AE013599-210|AAM70818.2| 894|Drosophila melanogaster CG3409-PA
protein.
Length = 894
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 198 AKLLTDKLTGQTATVQALTNEAADLVRTMNAGSSGYHPGPSTLIP 64
AKL TD + +A+ N ++ N G+S Y P T P
Sbjct: 2 AKLATDPNASNNNSCEAVNNNHNGQNQSQNGGASNYQALPLTPAP 46
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,185
Number of Sequences: 53049
Number of extensions: 241302
Number of successful extensions: 935
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 24,988,368
effective HSP length: 71
effective length of database: 21,221,889
effective search space used: 445659669
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -