Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c20
         (419 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2326|AAF55397.1|  643|Drosophila melanogaster CG5265-PA...    30   1.1  
BT023787-1|AAZ41796.1|  662|Drosophila melanogaster LD01568p pro...    30   1.4  
AE014297-453|ABI31145.1|  657|Drosophila melanogaster CG1041-PB,...    30   1.4  
AE014297-452|AAF54128.2|  662|Drosophila melanogaster CG1041-PA,...    30   1.4  

>AE014297-2326|AAF55397.1|  643|Drosophila melanogaster CG5265-PA
           protein.
          Length = 643

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 113 EMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 262
           + NV K+++ L +K+    +   K+FI  QR   DS+V + + L   KLH
Sbjct: 405 QKNVDKLVQDLQMKV-LKFDCYGKDFIKKQRLGPDSFVQMALQLAFFKLH 453


>BT023787-1|AAZ41796.1|  662|Drosophila melanogaster LD01568p
           protein.
          Length = 662

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 101 INQTEMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 262
           +N  + NV K+   L +K+    N   K+FI  QR   DS+V + + L   K+H
Sbjct: 426 LNVAQENVDKLADALQMKV-LKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMH 478


>AE014297-453|ABI31145.1|  657|Drosophila melanogaster CG1041-PB,
           isoform B protein.
          Length = 657

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 101 INQTEMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 262
           +N  + NV K+   L +K+    N   K+FI  QR   DS+V + + L   K+H
Sbjct: 421 LNVAQENVDKLADALQMKV-LKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMH 473


>AE014297-452|AAF54128.2|  662|Drosophila melanogaster CG1041-PA,
           isoform A protein.
          Length = 662

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 101 INQTEMNVSKVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 262
           +N  + NV K+   L +K+    N   K+FI  QR   DS+V + + L   K+H
Sbjct: 426 LNVAQENVDKLADALQMKV-LKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMH 478


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,543
Number of Sequences: 53049
Number of extensions: 177497
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1271883306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)